Pre_GI: BLASTP Hits

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Query: NC_010572:3925803:3953011 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 3953011, End: 3953586, Length: 576

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:3052494:309113230911323091815684Streptomyces cattleya NRRL 8057, complete genomeRNA polymerase ECF-subfamily sigma factor1e-74278
NC_013131:10413240:104313391043133910431857519Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-52206
NC_016109:4088259:408825940882594088831573Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor1e-39162
NC_017955:3670670:368276836827683683406639Modestobacter marinus, complete genomeRNA polymerase sigma-E factor7e-1063.9
NC_013131:7530000:754581375458137546373561Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1063.5
NC_014666:4547873:455305045530504553733684Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0962.4
NC_015434:4640769:466706546670654667562498Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein4e-0961.2
NC_014318:1537732:154374515437451544242498Amycolatopsis mediterranei U32 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor9e-0960.1
NC_014666:4547873:455674645567464557366621Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0960.1
NC_015434:3581001:359056835905683591095528Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein1e-0859.7
NC_015953:3782302:380522238052223805776555Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0858.5
NC_021177:4124839:414665741466574147223567Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase ECF-subfamily sigma factor4e-0857.8
NC_015957:527777:538567538567539109543Streptomyces violaceusniger Tu 4113 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0755.1
NC_009664:4423829:467450146745014674992492Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0753.5
NC_009664:4696961:471778947177894718379591Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0652
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor5e-0650.8
NC_014830:4012999:100361003610545510Intrasporangium calvum DSM 43043 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0650.1