Pre_GI: BLASTP Hits

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Query: NC_010501:5442000:5455115 Pseudomonas putida W619, complete genome

Start: 5455115, End: 5455402, Length: 288

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:3282702:329687132968713297158288Azotobacter vinelandii CA6, complete genometranscriptional regulator protein5e-34142
NC_012560:3282704:329687332968733297160288Azotobacter vinelandii DJ, complete genometranscriptional regulator protein5e-34142
NC_010067:3538169:356225335622533562543291Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-30130
NC_012489:4336790:436106143610614361372312Gemmatimonas aurantiaca T-27, complete genomeXre family DNA binding protein1e-1685.1
NC_014960:2371989:238808623880862388379294Anaerolinea thermophila UNI-1, complete genomeXre family DNA-binding protein2e-1477.8
NC_014722:846084:887212887212887508297Burkholderia rhizoxinica HKI 454, complete genometranscriptional repressor3e-1477
NC_014733:2201485:221464722146472214934288Methylovorus sp. MP688 chromosome, complete genomeDNA-binding protein4e-1476.6
NC_014153:2077647:209233220923322092637306Thiomonas intermedia K12 chromosome, complete genometranscriptional regulator, XRE family3e-1063.9
NC_013960:2592389:259616825961682596473306Nitrosococcus halophilus Nc4 chromosome, complete genomeputative DNA-binding protein4e-1063.2
NC_010645:1523867:153873115387311539051321Bordetella avium 197N, complete genomehypothetical protein2e-0961.2
NC_008786:4040864:405939940593994059722324Verminephrobacter eiseniae EF01-2, complete genomehelix-turn-helix domain protein9e-0958.9
NC_015572:4618467:463528346352834635564282Methylomonas methanica MC09 chromosome, complete genomeXRE family transcriptional regulator9e-0958.9
NC_014216:1197704:121671612167161217003288Desulfurivibrio alkaliphilus AHT2 chromosome, complete genometranscriptional regulator, XRE family1e-0858.5
NC_009997:2352948:237978023797802380067288Shewanella baltica OS195, complete genomeputative transcriptional regulator2e-0857.8
NC_016585:417979:431806431806432024219Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence2e-0857.4
NC_011894:7421867:743345474334547433816363Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, XRE family4e-0856.6
NC_013717:5726:270582705827339282Citrobacter rodentium ICC168 plasmid pCROD1, complete sequenceputative DNA binding protein7e-0856.2
NC_007484:293763:312416312416312724309Nitrosococcus oceani ATCC 19707, complete genometranscriptional regulator, XRE family6e-0856.2
NC_013889:1623697:163974916397491640033285Thioalkalivibrio sp. K90mix chromosome, complete genometranscriptional regulator, XRE family1e-0755.1
NC_009485:1487485:149487914948791495064186Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein2e-0754.7
NC_012560:3200961:320919232091923209503312Azotobacter vinelandii DJ, complete genomeDNA-binding protein3e-0754.3
NC_021150:3200959:320919032091903209501312Azotobacter vinelandii CA6, complete genomeDNA-binding protein3e-0754.3
NC_007517:344237:354581354581354892312Geobacter metallireducens GS-15, complete genometranscriptional regulator, XRE family2e-0754.3
NC_015942:1047576:106278710627871063098312Acidithiobacillus ferrivorans SS3 chromosome, complete genomeXRE family transcriptional regulator3e-0753.9
NC_008639:1462000:146219814621981462488291Chlorobium phaeobacteroides DSM 266, complete genomeputative DNA-binding protein3e-0753.9
NC_008577:1455000:146035414603541460659306Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator-like protein5e-0753.1
NC_013960:243884:253670253670253984315Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein5e-0753.1
NC_015276:3829059:383324238332423833547306Marinomonas mediterranea MMB-1 chromosome, complete genometranscriptional regulator, XRE family9e-0752.4
NC_014006:850763:891527891527891787261Sphingobium japonicum UT26S chromosome 1, complete genomeXre-family transcriptional regulator1e-0652
NC_007645:1336227:134425213442521344827576Hahella chejuensis KCTC 2396, complete genomepredicted transcriptional regulator1e-0652
NC_013960:1258000:126262312626231262910288Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein1e-0652
NC_020829:2152000:216316121631612163463303Pseudomonas denitrificans ATCC 13867, complete genomeDNA-binding protein2e-0650.8
NC_009483:936000:939563939563939874312Geobacter uraniireducens Rf4 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0650.4
NC_017269:303500:318521318521318835315Vibrio cholerae LMA3984-4 chromosome II, complete sequencehypothetical protein4e-0650.4
NC_016945:370471:415087415087415401315Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein4e-0650.4
NC_012667:931390:970665970665970979315Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein4e-0650.4
NC_012583:361241:424519424519424833315Vibrio cholerae O395 chromosome chromosome II, complete sequencevirulence gene repressor RsaL4e-0650.4
NC_009456:787322:839109839109839423315Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein4e-0650.4
NC_002506:370629:415268415268415582315Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein4e-0650.4
NC_016616:2644883:265253126525312652830300Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator7e-0649.3