Pre_GI: BLASTP Hits

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Query: NC_010322:4623867:4666726 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4666726, End: 4667013, Length: 288

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:583842:594787594787595062276Pseudomonas putida GB-1 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0961.6
NC_002947:2157648:218172421817242182032309Pseudomonas putida KT2440, complete genometranscriptional regulator, Cro/CI family1e-0858.5
NC_010322:1817598:183312418331241833405282Pseudomonas putida GB-1 chromosome, complete genomeXRE family transcriptional regulator1e-0858.2
NC_010501:2609567:262073326207332621008276Pseudomonas putida W619, complete genomehelix-turn-helix domain protein3e-0857.4
NC_010170:4800000:481912848191284819427300Bordetella petrii, complete genomepredicted transcriptional regulator3e-0857
NC_017986:2548720:256271225627122563032321Pseudomonas putida ND6 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0755.1
NC_015410:2698572:272656427265642726854291Pseudomonas mendocina NK-01 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0752.8
NC_012791:2386000:239246023924602392813354Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein2e-0651.2
NC_017986:5797044:581446358144635814777315Pseudomonas putida ND6 chromosome, complete genomePbsX family transcriptional regulator3e-0650.4