Pre_GI: BLASTP Hits

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Query: NC_010102:4557037:4562893 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 4562893, End: 4563057, Length: 165

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4425330:4444352444435244456261275Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-1165.9
NC_012125:4536383:4555441455544145567151275Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA polymerase V subunit UmuC7e-1165.9
NC_003198:4453457:4472479447247944737531275Salmonella enterica subsp. enterica serovar Typhi str. CT18,DNA polymerase IV7e-1165.9
NC_016816:4129299:4158370415837041593981029Pantoea ananatis LMG 5342, complete genomeDNA polymerase V subunit UmuC1e-0858.9
NC_016860:4024000:403053540305354030786252Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-0858.9
NC_009837:155284:157431157431157778348Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein1e-0858.5
NC_010488:48868:660686606866457390Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence2e-0858.2
NC_017047:1934430:1944000194400019452651266Rahnella aquatilis HX2 chromosome, complete genomeDNA polymerase V subunit UmuC5e-0856.6
NC_020418:2868000:2880167288016728811771011Morganella morganii subsp. morganii KT, complete genomeError-prone, lesion bypass DNA polymerase V (UmuC)2e-0651.2