Pre_GI: BLASTP Hits

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Query: NC_010067:660659:676333 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 676333, End: 676406, Length: 74

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:2324554:23278342327834232791077Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Pro6e-0649.7
NC_012912:2800884:28041522804152280422877Dickeya zeae Ech1591, complete genometRNA-Pro6e-0649.7
NC_012917:1840172:18796521879652187972877Pectobacterium carotovorum subsp. carotovorum PC1, complete genometRNA-Pro6e-0649.7
NC_004631:685357:70749770749770757377Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Pro6e-0649.7
NC_012125:1517925:15398721539872153994877Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Pro6e-0649.7
NC_014618:1593360:16052481605248160532477Enterobacter cloacae SCF1 chromosome, complete genometRNA-Pro6e-0649.7
NC_016832:687000:70745170745170752777Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Pro6e-0649.7
NC_016856:2379027:23823072382307238238377Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Pro6e-0649.7
NC_016857:2325190:23284702328470232854677Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Pro6e-0649.7
NC_016860:2323017:23262972326297232637377Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Pro6e-0649.7
NC_016831:687549:70939170939170946474Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Pro7e-0649.3
NC_016810:2325190:23284702328470232854374Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Pro7e-0649.3
NC_010102:683444:71498271498271505574Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Pro7e-0649.3