Pre_GI: BLASTP Hits

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Query: NC_009800:2651730:2658945 Escherichia coli HS, complete genome

Start: 2658945, End: 2660336, Length: 1392

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:3690308:3726329372632937277231395Enterobacteriaceae bacterium strain FGI 57, complete genomeP-type conjugative transfer protein TrbL2e-120432
NC_016602:2854107:2867942286794228695641623Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceTrbL/VirB6 plasmid conjugal transfer protein9e-56218
NC_016745:2028424:2045659204565920472781620Oceanimonas sp. GK1 chromosome, complete genomeTrbL/VirB6 plasmid conjugal transfer protein2e-55217
NC_008800:1300500:1316984131698413183841401Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative conjugal transfer protein4e-55216
NC_013722:1816561:1856743185674318581701428Xanthomonas albilineans, complete genomeputative conjugal transfer protein1e-51204
NC_006513:38818:4999349993515971605Azoarcus sp. EbN1, complete genomeplasmid like TrbL protein, component of conjugation system4e-51202
NC_006350:3865584:3877520387752038789501431Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative plasmid conjugal transfer protein1e-48194
NC_011000:183928:1953651953651967921428Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative plasmid conjugal transfer protein1e-48194
NC_013456:3011518:3023677302367730252811605Vibrio sp. Ex25 chromosome 1, complete genomeconjugative transfer protein TrbL3e-40166
NC_008782:2683989:2701523270152327031211599Acidovorax sp. JS42, complete genomeTrbL/VirB6 plasmid conjugal transfer protein1e-37157
NC_008344:2374761:2383773238377323852001428Nitrosomonas eutropha C91, complete genomeTrbL/VirB6 plasmid conjugal transfer protein2e-37157
NC_008344:669498:6800606800606814871428Nitrosomonas eutropha C91, complete genomeTrbL/VirB6 plasmid conjugal transfer protein2e-37157
NC_004741:2593012:260723726072372608043807Shigella flexneri 2a str. 2457T, complete genomeputative mating pair formation protein8e-37155
NC_008463:1293079:1314366131436613159881623Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative mating pair formation protein TrbL1e-35150
NC_012214:1212616:121790512179051218543639Erwinia pyrifoliae Ep1/96, complete genomeConjugal transfer protein, fragment2e-28127
NC_015733:1179977:1191396119139611929821587Pseudomonas putida S16 chromosome, complete genomeP-type conjugative transfer protein TrbL5e-26119
NC_006371:1743982:1752944175294417542571314Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical TrbL protein7e-26118
NC_011283:1307173:1313264131326413148681605Klebsiella pneumoniae 342 chromosome, complete genomeP-type conjugative transfer protein TrbL7e-24112
NC_007005:5500196:550704355070435508014972Pseudomonas syringae pv. syringae B728a, complete genomeconjugal transfer protein1e-22108
NC_008781:2611702:2639965263996526415901626Polaromonas naphthalenivorans CJ2, complete genomeType IV secretory pathway TrbL components-like protein7e-1995.5
NC_013422:1732677:1753244175324417547251482Halothiobacillus neapolitanus c2, complete genomeP-type conjugative transfer protein TrbL1e-1688.2
NC_008752:415599:4244274244274263701944Acidovorax avenae subsp. citrulli AAC00-1, complete genomeTrbL/VirB6 plasmid conjugal transfer protein2e-1274.7
NC_015437:697051:7291267291267302291104Selenomonas sputigena ATCC 35185 chromosome, complete genomeP-type conjugative transfer protein TrbL2e-0654.3
NC_015381:2859000:2874920287492028762961377Burkholderia gladioli BSR3 chromosome 1, complete sequenceTrbL/VirB6 plasmid conjugal transfer protein2e-0654.3