Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4469519 Kineococcus radiotolerans SRS30216, complete genome

Start: 4469519, End: 4472074, Length: 2556

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008541:2063218:2063218206321820657162499Arthrobacter sp. FB24 chromosome 1, complete sequencealpha-L-rhamnosidase0969
NC_010175:448020:4556344556344584922859Chloroflexus aurantiacus J-10-fl, complete genomealpha-L-rhamnosidase0709
NC_012032:448161:4557764557764586342859Chloroflexus sp. Y-400-fl, complete genomealpha-L-rhamnosidase0709
NC_013501:777947:7922327922327950392808Rhodothermus marinus DSM 4252, complete genomealpha-L-rhamnosidase0644
NC_010571:3903500:3918908391890839217332826Opitutus terrae PB90-1, complete genomealpha-L-rhamnosidase2e-180633
NC_013929:9450747:9468031946803194706702640Streptomyces scabiei 87.22 chromosome, complete genomerhamnosidase A5e-180632
NC_015389:616430:6410826410826433642283Coriobacterium glomerans PW2 chromosome, complete genomealpha-L-rhamnosidase9e-168591
NC_020054:2147857:2148227214822721509562730Fibrella aestuarina BUZ 2 drat genomealpha-L-rhamnosidase2e-165583
NC_015514:3307199:3322844332284433254832640Cellulomonas fimi ATCC 484 chromosome, complete genomealpha-L-rhamnosidase2e-161570
NC_016935:2347691:2415582241558224182842703Paenibacillus mucilaginosus 3016 chromosome, complete genomerhamnosidase A3e-158559
NC_015690:1818333:1885808188580818884802673Paenibacillus mucilaginosus KNP414 chromosome, complete genomerhamnosidase A2e-157556
NC_016641:5729308:5741552574155257443292778Paenibacillus terrae HPL-003 chromosome, complete genomerhamnosidase a1e-145517
NC_008010:222516:2397402397402425652826Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencealpha-L-rhamnosidase2e-141503
NC_015957:3342169:3350767335076733539703204Streptomyces violaceusniger Tu 4113 chromosome, complete genomealpha-L-rhamnosidase2e-140500
NC_017186:6395435:6395435639543563986263192Amycolatopsis mediterranei S699 chromosome, complete genomerhamnosidase2e-129463
NC_014318:6395392:6395392639539263985833192Amycolatopsis mediterranei U32 chromosome, complete genomerhamnosidase2e-129463
NC_008541:2063218:2068089206808920704192331Arthrobacter sp. FB24 chromosome 1, complete sequencealpha-L-rhamnosidase8e-117422
NC_011297:290737:2917662917662945312766Dictyoglomus thermophilum H-6-12, complete genomealpha-rhamnosidase4e-117422
NC_015177:391774:4086144086144113582745Pedobacter saltans DSM 12145 chromosome, complete genomealpha-L-rhamnosidase2e-108394
NC_014376:1217000:1259033125903312613392307Clostridium saccharolyticum WM1 chromosome, complete genomealpha-L-rhamnosidase3e-100366
NC_006347:700838:7008387008387035732736Bacteroides fragilis YCH46, complete genomeputative alpha-rhamnosidase4e-100366
NC_016776:701684:7043047043047070392736Bacteroides fragilis 638R, complete genomeputative exported rhamnosidase A9e-100365
NC_003228:648669:6486696486696514042736Bacteroides fragilis NCTC 9343, complete genomeputative exported rhamnosidase A8e-100365
NC_012622:2211631:2220040222004022226912652Sulfolobus islandicus Y.G.57.14 chromosome, complete genomealpha-L-rhamnosidase8e-98358
NC_012623:390402:3981823981824008332652Sulfolobus islandicus Y.N.15.51 chromosome, complete genomealpha-L-rhamnosidase1e-97358
NC_012589:2275276:2281767228176722844182652Sulfolobus islandicus L.S.2.15, complete genomealpha-L-rhamnosidase2e-97357
NC_017275:2176000:2181810218181021844612652Sulfolobus islandicus HVE10/4 chromosome, complete genomealpha-L-rhamnosidase2e-97357
NC_012726:2143670:2156315215631521589662652Sulfolobus islandicus M.16.4 chromosome, complete genomealpha-L-rhamnosidase2e-97357
NC_017276:2053790:2059936205993620625872652Sulfolobus islandicus REY15A chromosome, complete genomealpha-L-rhamnosidase2e-97357
NC_004663:3143198:3148116314811631515743459Bacteroides thetaiotaomicron VPI-5482, complete genomealpha-rhamnosidase5e-96352
NC_018581:3253731:3259268325926832615262259Gordonia sp. KTR9 chromosome, complete genomealpha-L-rhamnosidase5e-89329
NC_004663:3143198:3151580315158031542252646Bacteroides thetaiotaomicron VPI-5482, complete genomealpha-rhamnosidase1e-87325
NC_012914:336750:3547823547823574902709Paenibacillus sp. JDR-2, complete genomealpha-L-rhamnosidase4e-85316
NC_016609:6177651:6179660617966061822752616Niastella koreensis GR20-10 chromosome, complete genomealpha-L-rhamnosidase8e-85315
NC_013406:3400114:3432565343256534352642700Paenibacillus sp. Y412MC10 chromosome, complete genomealpha-L-rhamnosidase1e-81305
NC_014655:1835848:1840763184076318432972535Leadbetterella byssophila DSM 17132 chromosome, complete genomealpha-l-rhamnosidase3e-81303
NC_009614:3476000:3481873348187334846292757Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase6e-79296
NC_019960:1658657:1662670166267016653302661Prevotella dentalis DSM 3688 chromosome 1, complete sequencealpha-L-rhamnosidase6e-72272
NC_019960:469412:4914064914064947053300Prevotella dentalis DSM 3688 chromosome 1, complete sequenceglycogen debranching enzyme1e-60235
NC_012912:1200000:1208815120881512114632649Dickeya zeae Ech1591, complete genomealpha-L-rhamnosidase4e-40167
NC_016845:2781438:2791653279165327942652613Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,alpha-L-rhamnosidase2e-28127
NC_012731:2739964:2751243275124327538672625Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomealpha-L-rhamnosidase family5e-28127
NC_020054:2066510:2093949209394920962252277Fibrella aestuarina BUZ 2 drat genomealpha-L-rhamnosidase1e-0862.4