Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4445355 Kineococcus radiotolerans SRS30216, complete genome

Start: 4445355, End: 4446227, Length: 873

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009664:4423829:464841046484104649252843Kineococcus radiotolerans SRS30216, complete genomeplasmid encoded RepA protein4e-137487
NC_009664:4423829:451408545140854514396312Kineococcus radiotolerans SRS30216, complete genomeplasmid encoded RepA protein1e-35150
NC_007973:3065632:307223730722373073226990Ralstonia metallidurans CH34 chromosome 1, complete sequenceplasmid encoded RepA protein6e-32137
NC_015259:624979:637728637728638627900Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative RepA replicase protein8e-28124
NC_006350:3865584:388632238863223887254933Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative plasmid replication protein2e-2099.8
NC_008702:2230396:223914422391442239623480Azoarcus sp. BH72, complete genomeprotein kinase4e-1995.1
NC_015382:266000:295729573931975Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequencePutative RepA replicase protein2e-1893.2
NC_007507:101887:1084411084411096671227Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative replication protein A2e-1790.1
NC_011770:4924127:495919149591914960168978Pseudomonas aeruginosa LESB58, complete genomeRepA5e-1685.1
NC_008752:415599:421826421826422725900Acidovorax avenae subsp. citrulli AAC00-1, complete genomeplasmid encoded RepA protein4e-1582.4
NC_008782:867344:885127885127886035909Acidovorax sp. JS42, complete genomeplasmid encoded RepA protein4e-1582
NC_015853:1:117131171312702990Acidithiobacillus caldus SM-1 plasmid pLAtc2, complete sequenceRepA1e-1377.4
NC_003919:2824000:2840860284086028418611002Xanthomonas axonopodis pv. citri str. 306, complete genomereplication protein3e-1272.4
NC_013211:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020, completeplasmid replication initiator RepA1e-1170.9
NC_017105:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_020,plasmid replication initiator RepA1e-1170.9
NC_017113:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-020, completeplasmid replication initiator RepA1e-1170.9
NC_017118:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-020, completeplasmid replication initiator RepA1e-1170.9
NC_017122:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-020, completeplasmid replication initiator RepA1e-1170.9
NC_017126:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-020, completeplasmid replication initiator RepA1e-1170.9
NC_017131:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-020, completeplasmid replication initiator RepA1e-1170.9
NC_017149:163390:171897171897172820924Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020, completeplasmid replication initiator RepA1e-1170.9
NC_009800:2651730:266346526634652664313849Escherichia coli HS, complete genomeplasmid encoded RepA protein6e-1168.2