Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4442745 Kineococcus radiotolerans SRS30216, complete genome

Start: 4442745, End: 4445234, Length: 2490

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014762:1204584:1218433121843312207902358Sulfuricurvum kujiense DSM 16994 chromosome, complete genomesmc domain protein1e-1689
NC_017187:1580988:1580988158098815833572370Arcobacter butzleri ED-1, complete genomechromosome segregation protein5e-1584
NC_017187:1564403:1580988158098815833572370Arcobacter butzleri ED-1, complete genomechromosome segregation protein5e-1584
NC_009663:738846:7433417433417457072367Sulfurovum sp. NBC37-1, complete genomeDNA double-strand break repair protein2e-1378.2
NC_015416:2723189:2734177273417727373563180Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein3e-1378.2
NC_015676:2099930:2112140211214021148062667Methanosalsum zhilinae DSM 4017 chromosome, complete genomeSMC domain-containing protein2e-0965.5
NC_000868:1168819:1176484117648411791262643Pyrococcus abyssi GE5, complete genomechromosome segregation protein5e-0963.9
NC_015474:1490668:1504066150406615067052640Pyrococcus sp. NA2 chromosome, complete genomechromosome segregation protein1e-0862.8
NC_003413:1107965:1114820111482011174682649Pyrococcus furiosus DSM 3638, complete genomechromosome segregation protein1e-0862.4
NC_019791:570923:5833485833485861042757Caldisphaera lagunensis DSM 15908 chromosome, complete genomeDNA repair ATPase4e-0860.8
NC_000961:828416:8380948380948407332640Pyrococcus horikoshii OT3, complete genomechromosome segregation protein5e-0860.5
NC_016051:1005188:1026183102618310288402658Thermococcus sp. AM4 chromosome, complete genomeDNA double-strand break repair rad50 ATPase8e-0859.7
NC_014122:726070:7324287324287350492622Methanocaldococcus infernus ME chromosome, complete genomeSMC domain protein1e-0758.9
NC_015975:441580:4427044427044458083105Lactobacillus ruminis ATCC 27782 chromosome, complete genomeExonuclease SbcCD subunit C2e-0758.5
NC_013741:27353:4926249262518682607Archaeoglobus profundus DSM 5631, complete genomeSMC domain protein3e-0757.8
NC_014160:748743:7794917794917823042814Thermosphaera aggregans DSM 11486 chromosome, complete genomeSMC domain-containing protein4e-0757.4
NC_002578:828000:8322598322598356813423Thermoplasma acidophilum DSM 1728, complete genomechromosome segregation protein related ptotein5e-0757.4
NC_015216:2113556:2120372212037221230742703Methanobacterium sp. AL-21 chromosome, complete genomeSMC domain-containing protein2e-0655.5
NC_015733:1793399:1793399179339917970433645Pseudomonas putida S16 chromosome, complete genomeSMC domain-containing protein2e-0655.1
NC_009523:1101214:1117623111762311206913069Roseiflexus sp. RS-1 chromosome, complete genomeSMC domain-containing protein2e-0655.1
NC_005140:660305:6603056603056633703066Vibrio vulnificus YJ016 chromosome II, complete sequenceputative exonuclease SbcC4e-0653.9
NC_004460:81687:8168781687847523066Vibrio vulnificus CMCP6 chromosome II, complete sequenceATPase involved in DNA repair5e-0653.9