Pre_GI: BLASTP Hits

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Query: NC_009664:4347718:4372388 Kineococcus radiotolerans SRS30216, complete genome

Start: 4372388, End: 4373200, Length: 813

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014666:4547873:455305045530504553733684Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-26117
NC_017955:3670670:368276836827683683406639Modestobacter marinus, complete genomeRNA polymerase sigma-E factor3e-23108
NC_015957:527777:538567538567539109543Streptomyces violaceusniger Tu 4113 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit4e-23108
NC_014666:4547873:455674645567464557366621Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-22104
NC_015434:4640769:466706546670654667562498Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein6e-2098.2
NC_015434:3581001:359056835905683591095528Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein1e-1997.1
NC_015671:1865752:188091018809101881560651Cellvibrio gilvus ATCC 13127 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1893.6
NC_013131:7530000:754581375458137546373561Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1893.2
NC_013595:3952196:396014139601413960653513Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1892.8
NC_013947:3406000:341769134176913418221531Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily1e-1687
NC_014318:1537732:154374515437451544242498Amycolatopsis mediterranei U32 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-1685.1
NC_015953:3782302:380522238052223805776555Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-1580.9
NC_021177:4124839:414665741466574147223567Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase ECF-subfamily sigma factor1e-1480.5
NC_014830:4012999:100361003610545510Intrasporangium calvum DSM 43043 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1480.5
NC_016109:2938000:295136229513622951883522Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor3e-1479
NC_009664:4423829:462452046245204625191672Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1377.4
NC_013929:1119384:113906711390671139573507Streptomyces scabiei 87.22 chromosome, complete genomesigma factor1e-1273.9
NC_013729:6217500:621908162190816219575495Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1273.6
NC_017093:3777178:379561837956183796130513Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor5e-1272
NC_009664:4423829:467450146745014674992492Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-1270.9
NC_009664:4696961:473045147304514731020570Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1167.8
NC_016109:4088259:408825940882594088831573Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor2e-1066.6
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor4e-1065.5
NC_013131:10413240:104313391043133910431857519Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-1064.3
NC_016111:3052494:309113230911323091815684Streptomyces cattleya NRRL 8057, complete genomeRNA polymerase ECF-subfamily sigma factor8e-1064.3
NC_010572:3925803:395301139530113953586576Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative RNA polymerase ECF-subfamily sigma factor1e-0963.5
NC_015953:3159234:316146431614643162048585Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit7e-0961.2
NC_019673:3253650:325714232571423257648507Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-0860.5
NC_011992:1318691:131869113186911319206516Acidovorax ebreus TPSY, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0859.3
NC_014150:1006000:102603910260391026611573Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0858.5
NC_014330:1957725:196524019652401965806567Brachyspira pilosicoli 95/1000 chromosome, complete genomeRNA polymerase sigma-24 subunit1e-0757
NC_019908:1296870:130311113031111303680570Brachyspira pilosicoli P43/6/78 chromosome, complete genomeRNA polymerase sigma-24 subunit1e-0757
NC_016631:3114000:313063631306363131205570Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0653.9
NC_013510:5175649:517647651764765177051576Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0652.8
NC_014391:2875553:288034328803432880780438Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase5e-0651.6