Pre_GI: BLASTP Hits

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Query: NC_009664:3969609:3972300 Kineococcus radiotolerans SRS30216, complete genome

Start: 3972300, End: 3972866, Length: 567

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014210:3671495:367403736740373674522486Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Holliday junction resolvase YqgF6e-1580.5
NC_014632:402500:412497412497412916420Ilyobacter polytropus DSM 2926 chromosome, complete genomeHolliday junction resolvase YqgF1e-0859.7
NC_003454:1346500:135675113567511357167417Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeDNA integration/recombination/invertion protein2e-0858.9
NC_012803:1373500:137571813757181376287570Micrococcus luteus NCTC 2665, complete genomeputative Holliday junction resolvase3e-0858.2
NC_016782:1316467:133511313351131335628516Corynebacterium diphtheriae 241 chromosome, complete genomeholliday junction resolvase-like protein5e-0857.4
NC_016786:1316436:133508313350831335598516Corynebacterium diphtheriae HC01 chromosome, complete genomeholliday junction resolvase-like protein5e-0857.4
NC_016790:1259356:130191313019131302428516Corynebacterium diphtheriae VA01 chromosome, complete genomeholliday junction resolvase-like protein5e-0857.4
NC_016802:1317365:133601213360121336527516Corynebacterium diphtheriae HC02 chromosome, complete genomeholliday junction resolvase-like protein6e-0857
NC_002935:1315019:136142113614211361972552Corynebacterium diphtheriae NCTC 13129, complete genomeHolliday junction resolvase-like protein6e-0857
NC_020126:8287556:829450682945068294970465Myxococcus stipitatus DSM 14675, complete genomehypothetical protein7e-0857
NC_016788:1315877:133452413345241335039516Corynebacterium diphtheriae HC04 chromosome, complete genomeholliday junction resolvase-like protein1e-0755.8
NC_016789:1334514:138092113809211381436516Corynebacterium diphtheriae PW8 chromosome, complete genomeholliday junction resolvase-like protein1e-0755.8
NC_016799:1343020:139056513905651391080516Corynebacterium diphtheriae 31A chromosome, complete genomeholliday junction resolvase-like protein1e-0755.8
NC_016801:1361597:138024113802411380756516Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeholliday junction resolvase-like protein1e-0755.8
NC_015687:1811573:183169718316971832104408Clostridium acetobutylicum DSM 1731 chromosome, complete genomeHolliday junction resolvase-like protein1e-0755.8
NC_017295:1809386:182951018295101829917408Clostridium acetobutylicum EA 2018 chromosome, complete genomeHolliday junction resolvase-like protein1e-0755.8
NC_007760:1415663:142935014293501429763414Anaeromyxobacter dehalogenans 2CP-C, complete genomeHolliday junction resolvase YqgF2e-0755.5
NC_011891:3004000:300595330059533006366414Anaeromyxobacter dehalogenans 2CP-1, complete genomeHolliday junction resolvase YqgF2e-0755.5
NC_003030:1811820:183009718300971830504408Clostridium acetobutylicum ATCC 824, complete genomeHolliday junction resolvase-like protein2e-0755.5
NC_018643:641360:663858663858664313456Alpha proteobacterium HIMB5 chromosome, complete genomeRNAse H domain protein, YqgF family3e-0754.7
NC_008095:7211395:721748872174887217943456Myxococcus xanthus DK 1622, complete genomeconserved hypothetical protein TIGR002504e-0754.3
NC_015711:4033975:404848940484894048959471Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein6e-0753.9
NC_017030:7967192:797333679733367973800465Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein7e-0753.5
NC_014328:1307490:131670813167081317121414Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Holliday junction resolvase8e-0753.5
NC_014844:2638994:263860526386052639021417Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeHolliday junction resolvase YqgF8e-0753.5
NC_014098:1114076:111924311192431119716474Bacillus tusciae DSM 2912 chromosome, complete genomeHolliday junction resolvase YqgF1e-0653.1
NC_021182:2422226:244403424440342444456423Clostridium pasteurianum BC1, complete genomeRNAse H-fold protein YqgF1e-0652.8
NC_008593:1461771:147028614702861470693408Clostridium novyi NT, complete genomePutative Holliday junction resolvase3e-0651.2
NC_014033:675626:691754691754692167414Prevotella ruminicola 23 chromosome, complete genomehypothetical protein5e-0650.8