Pre_GI: BLASTP Hits

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Query: NC_009512:469000:477112 Pseudomonas putida F1, complete genome

Start: 477112, End: 477678, Length: 567

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004459:349500:372848372848373390543Vibrio vulnificus CMCP6 chromosome I, complete sequenceRibosomal protein L224e-41167
NC_009719:1972545:197716819771681977689522Parvibaculum lavamentivorans DS-1 chromosome, complete genomehypothetical protein1e-1789.4
NC_008435:2658986:271792527179252718446522Rhodopseudomonas palustris BisA53, complete genomeprotein of unknown function DUF9555e-1787.4
NC_004463:60225:616396163962160522Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein7e-1683.6
NC_015580:293803:322711322711323229519Novosphingobium sp. PP1Y, complete genomehypothetical protein5e-1580.5
NC_008686:405159:412240412240412752513Paracoccus denitrificans PD1222 chromosome 1, complete sequenceprotein of unknown function DUF9551e-1376.3
NC_014664:1560926:156991415699141570396483Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeprotein of unknown function DUF9555e-1374.3
NC_017249:60216:616306163061998369Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1169.3
NC_016776:4115889:413532041353204136057738Bacteroides fragilis 638R, complete genomehypothetical protein1e-1169.3
NC_007777:135222:157382157382157909528Frankia sp. CcI3, complete genomeprotein of unknown function DUF9552e-1168.9
NC_020209:5077410:508840450884045088820417Pseudomonas poae RE*1-1-14, complete genome50S ribosomal protein L222e-1168.6
NC_007777:1018824:102731110273111027859549Frankia sp. CcI3, complete genomeprotein of unknown function DUF9557e-1167
NC_008543:2220698:222978322297832230670888Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceprotein of unknown function DUF9552e-1065.5
NC_015738:1858455:185845518584551859231777Eggerthella sp. YY7918, complete genomeputative Zn peptidase7e-1063.5
NC_019012:61360:762317623176731501Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequencehypothetical protein2e-0962.4
NC_014910:465980:495668495668496597930Alicycliphilus denitrificans BC chromosome, complete genomehypothetical protein2e-0962.4
NC_008343:1699132:170780917078091708309501Granulibacter bethesdensis CGDNIH1, complete genomehypothetical protein2e-0962
NC_014218:1437931:145264114526411453441801Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomehypothetical protein5e-0960.8
NC_014011:1760793:179170917917091792461753Aminobacterium colombiense DSM 12261 chromosome, complete genomeprotein of unknown function DUF9559e-0959.7
NC_008825:2525380:254075925407592541628870Methylibium petroleiphilum PM1, complete genomehypothetical protein1e-0859.3
NC_012483:1841000:184110218411021841935834Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein2e-0859.3
NC_011891:1225000:1238780123878012400121233Anaeromyxobacter dehalogenans 2CP-1, complete genomehelix-turn-helix domain protein2e-0858.9
NC_012968:1594954:160893416089341609752819Methylotenera mobilis JLW8, complete genomeprotein of unknown function DUF9553e-0858.5
NC_012704:1870000:191101319110131911579567Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein2e-0858.5
NC_015942:722980:7337707337707349181149Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein2e-0858.5
NC_014652:420457:426575426575427342768Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein9e-0856.6
NC_006513:1379735:1427026142702614281951170Azoarcus sp. EbN1, complete genomeputative transcriptional regulator9e-0856.6
NC_009076:75535:876788767888547870Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein1e-0755.8
NC_010170:4800000:489663148966314897497867Bordetella petrii, complete genomehypothetical protein2e-0755.1
NC_010278:1045884:105617410561741056737564Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,Zn peptidase3e-0755.1
NC_009053:1081651:109193910919391092502564Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein3e-0755.1
NC_009720:622262:622262622262623146885Xanthobacter autotrophicus Py2, complete genomehypothetical protein3e-0755.1
NC_004757:2730057:277718527771852778096912Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein5e-0754.3
NC_009437:1556934:157738315773831578156774Caldicellulosiruptor saccharolyticus DSM 8903, complete genomehypothetical protein5e-0754.3
NC_007907:960104:102213610221361022699564Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-0754.3
NC_008025:1998500:2007222200722220083521131Deinococcus geothermalis DSM 11300, complete genomeprotein of unknown function DUF9558e-0753.5
NC_015663:1356982:1364836136483613659241089Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein9e-0753.1
NC_011000:1216430:123198112319811232850870Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein9e-0753.1
NC_007490:76838:932779327794062786Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequencehypothetical protein1e-0653.1
NC_009256:3601080:361204736120473613003957Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein1e-0652.8
NC_004578:4781326:4788681478868147898171137Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein1e-0652.8
NC_014837:33014:4755647556486411086Pantoea sp. At-9b chromosome, complete genomehypothetical protein2e-0652.4
NC_007164:822000:834617834617835435819Corynebacterium jeikeium K411, complete genomehypothetical protein2e-0652
NC_013131:8480384:849058984905898491440852Catenulispora acidiphila DSM 44928, complete genomeprotein of unknown function DUF9554e-0651.2
NC_016627:3972751:397367639736763974470795Clostridium clariflavum DSM 19732 chromosome, complete genomeputative Zn peptidase6e-0650.8