Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:4913767:4931210 Pseudomonas mendocina ymp, complete genome

Start: 4931210, End: 4931695, Length: 486

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:68251:858698586986354486Azotobacter vinelandii CA6, complete genomezinc uptake transcriptional regulator, Fur family2e-67254
NC_012560:68251:858698586986354486Azotobacter vinelandii DJ, complete genomezinc uptake transcriptional regulator, Fur family2e-67254
NC_018868:2615822:261853926185392619021483Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genometranscriptional regulator2e-37154
NC_005966:159232:176915176915177403489Acinetobacter sp. ADP1, complete genometranscriptional repressor of Zn transport system (Fur family)4e-32136
NC_008709:3911654:391401739140173914466450Psychromonas ingrahamii 37, complete genomeferric uptake regulator, Fur family protein3e-25114
NC_016002:1765959:178316317831631783597435Pseudogulbenkiania sp. NH8B, complete genomeFur family ferric/zinc uptake regulator3e-24110
NC_015224:4101939:411172341117234112235513Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,zinc uptake transcriptional repressor6e-23106
NC_013961:3413011:343379934337993434308510Erwinia amylovora, complete genomePeroxide operon regulator1e-2099
NC_013971:335247:337074337074337583510Erwinia amylovora ATCC 49946 chromosome, complete genomezinc uptake regulation protein1e-2099
NC_018145:104303:105564105564106049486Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeferric uptake regulator family protein2e-1994.7
NC_013355:105500:105535105535106020486Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeferric uptake regulator, Fur family3e-1994.4
NC_015186:2931000:295191129519112952381471Acidiphilium multivorum AIU301, complete genomeFur family transcriptional regulator3e-1994.4
NC_010740:1051000:107065310706531071090438Brucella abortus S19 chromosome 2, complete sequenceFerric-uptake regulator7e-1889.7
NC_010167:1287000:130991313099131310350438Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein7e-1889.7
NC_015858:1150446:116983711698371170274438Brucella pinnipedialis B2/94 chromosome chromosome 2, completeFUR family transcriptional regulator7e-1889.7
NC_006933:1051873:107139610713961071833438Brucella abortus biovar 1 str. 9-941 chromosome II, completetranscriptional regulator, Fur family7e-1889.7
NC_007624:1046500:106615210661521066589438Brucella melitensis biovar Abortus 2308 chromosome II, completeFerric-uptake regulator7e-1889.7
NC_004311:1096649:111628411162841116721438Brucella suis 1330 chromosome II, complete sequencetranscriptional regulator, Fur family7e-1889.7
NC_013118:1109610:112922311292231129660438Brucella microti CCM 4915 chromosome 2, complete genometranscriptional regulator, Fur family7e-1889.7
NC_010104:1096081:111571511157151116152438Brucella canis ATCC 23365 chromosome II, complete sequenceFerric uptake regulation protein7e-1889.7
NC_009668:1591290:161118516111851611601417Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceferric uptake regulator family protein2e-1788.6
NC_014932:1232346:127218112721811272573393Bartonella clarridgeiae 73, complete genometranscriptional regulator, Fur family2e-1788.6
NC_008783:1101973:111492711149271115313387Bartonella bacilliformis KC583, complete genomeputative transcriptional regulator4e-1787
NC_020300:1241968:125190112519011252293393Bartonella australis Aust/NH1, complete genometranscriptional regulator2e-1685.1
NC_005956:1402500:141530714153071415699393Bartonella henselae str. Houston-1, complete genomeTranscriptional regulator2e-1685.1
NC_012846:1741000:175496417549641755356393Bartonella grahamii as4aup, complete genometranscriptional regulator, Fur family2e-1581.6
NC_007645:1698803:172894917289491729410462Hahella chejuensis KCTC 2396, complete genomeFe2+/Zn2+ uptake regulation protein3e-1580.9
NC_020301:1342924:135715913571591357551393Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genometranscriptional regulator4e-1580.5
NC_010161:1844452:185768418576841858076393Bartonella tribocorum CIP 105476, complete genomeFUR family transcriptional regulator7e-1579.7
NC_005955:1166521:117950711795071179899393Bartonella quintana str. Toulouse, complete genomeTranscriptional regulator5e-1476.6
NC_018644:137755:168679168679169107429Alpha proteobacterium HIMB59 chromosome, complete genometranscriptional regulator, Fur family2e-1065.1
NC_016048:1390463:140720014072001407613414Oscillibacter valericigenes Sjm18-20, complete genomeputative Fur family transcriptional regulator1e-0858.9
NC_014414:2467639:247611624761162476577462Parvularcula bermudensis HTCC2503 chromosome, complete genometranscriptional regulator, Fur family protein3e-0857.4
NC_008820:1143500:114574011457401146300561Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein3e-0754.7
NC_020181:527592:536149536149536448300Enterobacter aerogenes EA1509E, complete genomehypothetical protein5e-0753.5
NC_002939:1505701:150792015079201508351432Geobacter sulfurreducens PCA, complete genomeferric uptake regulation protein Fur6e-0753.5