Pre_GI: BLASTP Hits

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Query: NC_009439:442890:444964 Pseudomonas mendocina ymp, complete genome

Start: 444964, End: 445722, Length: 759

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4312892:435189043518904352681792Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-65249
NC_011653:1339868:1357999135799913593091311Thermosipho africanus TCF52B, complete genomebacterial extracellular solute-binding protein, family 32e-1789.4
NC_007645:4195500:420167242016724202415744Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain3e-1582.4
NC_007645:2049988:205642120564212057194774Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain2e-1479.3
NC_015733:3595882:359588235958823596658777Pseudomonas putida S16 chromosome, complete genomeextracellular solute-binding protein2e-1376.3
NC_007645:2049988:205722720572272057985759Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain5e-1375.1
NC_017506:3248724:326370532637053264511807Marinobacter adhaerens HP15 chromosome, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain-containing protein4e-1168.6
NC_007954:1823085:184104418410441841805762Shewanella denitrificans OS217, complete genomeABC transporter, periplasmic domain8e-1167.4
NC_008751:2988235:300122630012263002035810Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeextracellular solute-binding protein, family 37e-1064.7
NC_009831:3092126:309510630951063095924819Shewanella sediminis HAW-EB3, complete genomeextracellular solute-binding protein, family 32e-0963.2
NC_007645:2628423:263754026375402638322783Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain2e-0962.8
NC_007645:1378337:138229613822961383057762Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain2e-0962.8
NC_003910:2588000:258885025888502589647798Colwellia psychrerythraea 34H, complete genomebacterial extracellular solute-binding protein, family 38e-0960.8
NC_007645:2408125:242285624228562423713858Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain2e-0859.7
NC_015675:4565500:456927145692714570086816Mesorhizobium opportunistum WSM2075 chromosome, complete genomefamily 3 extracellular solute-binding protein3e-0755.8
NC_008751:2988235:300480430048043005646843Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeextracellular solute-binding protein, family 33e-0755.8
NC_007645:3712272:371607237160723716863792Hahella chejuensis KCTC 2396, complete genomeABC-type amino acid transport/signal transduction systems, periplasmic component/domain2e-0653.1
NC_009901:2272206:228997622899762290767792Shewanella pealeana ATCC 700345, complete genomeconserved hypothetical ABC transporter protein3e-0652.4
NC_015379:6226661:6228660622866062323793720Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative diguanylate cyclase/phosphodiesterase6e-0651.2