Pre_GI: BLASTP Hits

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Query: NC_009439:4404942:4414352 Pseudomonas mendocina ymp, complete genome

Start: 4414352, End: 4415752, Length: 1401

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:5056901:5063252506325250646791428Methylobacterium nodulans ORS 2060, complete genomehypothetical protein1e-104380
NC_002695:1929215:1937097193709719384881392Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-99362
NC_002655:2142587:2148677214867721500681392Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933R2e-99362
NC_010322:583842:5992255992256005711347Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein4e-54212
NC_014100:449541:4607844607844621301347Caulobacter segnis ATCC 21756 chromosome, complete genomehypothetical protein1e-48194
NC_011894:7109374:7122706712270671240671362Methylobacterium nodulans ORS 2060, complete genomehypothetical protein5e-47189
NC_011894:3988500:3998305399830539996481344Methylobacterium nodulans ORS 2060, complete genomehypothetical protein6e-47188
NC_015947:223184:2332732332732346131341Burkholderia sp. JV3 chromosome, complete genomehypothetical protein1e-42174
NC_007964:2762000:276622027662202767173954Nitrobacter hamburgensis X14, complete genomehypothetical protein1e-32141
NC_010723:2082750:2086875208687520879991125Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein3e-26119
NC_010322:583842:6020856020856038061722Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein1e-23111
NC_014100:449541:4579234579234596471725Caulobacter segnis ATCC 21756 chromosome, complete genome1e-21104
NC_015666:2224717:2233667223366722359522286Halopiger xanaduensis SH-6 chromosome, complete genomehypothetical protein9e-0962