Pre_GI: BLASTP Hits

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Query: NC_009439:3535152:3534370 Pseudomonas mendocina ymp, complete genome

Start: 3534370, End: 3535161, Length: 792

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:1965264:196839619683961969184789Azotobacter vinelandii CA6, complete genomehydroxypyruvate isomerase protein4e-96350
NC_012560:1965251:196838319683831969171789Azotobacter vinelandii DJ, complete genomehydroxypyruvate isomerase protein4e-96350
NC_010498:4967724:497439449743944975176783Escherichia coli SMS-3-5, complete genomehydroxypyruvate isomerase Gcxl9e-55213
NC_006513:2708213:272860627286062729448843Azoarcus sp. EbN1, complete genomeputative hydroxypyruvate isomerase protein9e-53206
NC_013850:2846069:284669428466942847476783Klebsiella variicola At-22 chromosome, complete genomeHydroxypyruvate isomerase6e-52204
NC_020453:3103549:310536931053693106160792Agromonas oligotrophica S58 DNA, complete genomehydroxypyruvate isomerase4e-50198
NC_011894:3161289:318899731889973189788792Methylobacterium nodulans ORS 2060, complete genomehydroxypyruvate isomerase3e-50198
NC_015733:3736104:378104337810433781798756Pseudomonas putida S16 chromosome, complete genomehydroxypyruvate isomerase2e-48192
NC_009664:63230:790917909179912822Kineococcus radiotolerans SRS30216, complete genomeHydroxypyruvate isomerase1e-47190
NC_011283:2836000:285675928567592857541783Klebsiella pneumoniae 342 chromosome, complete genomeAP endonuclease, family 22e-47189
NC_011283:2836000:283983128398312840613783Klebsiella pneumoniae 342 chromosome, complete genomeAP endonuclease, family 22e-47189
NC_008782:1863853:188682918868291887656828Acidovorax sp. JS42, complete genomeHydroxypyruvate isomerase1e-46186
NC_008570:1143578:114280811428081143581774Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeAP endonuclease, family 28e-44177
NC_009801:3013838:304011830401183040894777Escherichia coli E24377A, complete genomeAP endonuclease, family 22e-43176
NC_003197:3005842:305803230580323058808777Salmonella typhimurium LT2, complete genomeputative endonuclease2e-41169
NC_016856:3026426:307826930782693079045777Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-41169
NC_016860:3029272:308146230814623082238777Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-41169
NC_016863:2974333:302652130265213027297777Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-41169
NC_017046:3027161:307934830793483080124777Salmonella enterica subsp. enterica serovar Typhimurium str. 798hydroxypyruvate isomerase2e-41169
NC_016831:2867766:292005529200552920831777Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative hydroxypyruvate isomerase2e-41169
NC_013416:16493:218242182422600777Aggregatibacter actinomycetemcomitans D11S-1, complete genomehydroxypyruvate isomerase5e-40164
NC_016513:317197:324142324142324918777Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehydroxypyruvate isomerase6e-40164
NC_010676:2658495:267663426766342677422789Burkholderia phytofirmans PsJN chromosome 2, complete sequenceHydroxypyruvate isomerase8e-40164
NC_016810:3028421:308060830806083081369762Salmonella enterica subsp. enterica serovar Typhimurium strputative hydroxypyruvate isomerase8e-39160
NC_016857:3028421:308060830806083081369762Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74YgbM protein8e-39160
NC_015381:1623587:167294016729401673710771Burkholderia gladioli BSR3 chromosome 1, complete sequencehydroxypyruvate isomerase4e-31135
NC_013729:4978401:498338749833874984196810Kribbella flavida DSM 17836, complete genomeHydroxypyruvate isomerase5e-29128
NC_018531:3983925:399947439994744000277804Arthrobacter sp. Rue61a chromosome, complete genomehydroxypyruvate isomerase2e-21103
NC_014364:2751662:276072227607222761519798Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeXylose isomerase domain protein TIM barrel4e-1995.1
NC_010175:448020:464693464693465463771Chloroflexus aurantiacus J-10-fl, complete genomeXylose isomerase domain protein TIM barrel6e-1891.3
NC_012032:448161:464835464835465605771Chloroflexus sp. Y-400-fl, complete genomeXylose isomerase domain protein TIM barrel6e-1891.3
NC_018531:1900619:193793319379331938709777Arthrobacter sp. Rue61a chromosome, complete genomexylose isomerase domain-containing protein6e-1787.8
NC_014041:4517999:452638645263864527327942Zunongwangia profunda SM-A87 chromosome, complete genomeprobable glyoxylate-induced protein9e-1580.9
NC_014364:773500:773883773883774707825Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeXylose isomerase domain protein TIM barrel2e-1376.3
NC_015914:4489601:450363545036354504549915Cyclobacterium marinum DSM 745 chromosome, complete genomexylose isomerase domain-containing protein2e-1273.2
NC_015737:1724590:172892417289241729718795Clostridium sp. SY8519, complete genomehydroxypyruvate isomerase2e-1169.7
NC_014963:5034904:505526250552625056122861Terriglobus saanensis SP1PR4 chromosome, complete genomexylose isomerase domain-containing protein3e-1168.9
NC_009832:2596344:261601126160112616790780Serratia proteamaculans 568, complete genomeXylose isomerase domain protein TIM barrel3e-1065.9
NC_015379:2751342:275501627550162755807792Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative isomerase4e-1065.5
NC_014364:3707311:372507537250753725887813Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeXylose isomerase domain protein TIM barrel7e-1064.3
NC_013757:2858327:287227328722732873049777Geodermatophilus obscurus DSM 43160, complete genomeXylose isomerase domain protein TIM barrel4e-0962
NC_013850:3340882:335603633560363356815780Klebsiella variicola At-22 chromosome, complete genomeXylose isomerase domain protein TIM barrel1e-0860.5
NC_015594:489367:501140501140502024885Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completexylose isomerase domain-containing protein4e-0755.5
NC_015703:754172:775723775723776574852Runella slithyformis DSM 19594 chromosome, complete genomeXylose isomerase domain-containing protein TIM barrel1e-0653.5
NC_011071:1178423:119365311936531194549897Stenotrophomonas maltophilia R551-3, complete genomeXylose isomerase domain protein TIM barrel3e-0652.8
NC_009328:1903291:191900519190051919901897Geobacillus thermodenitrificans NG80-2 chromosome, complete genomemyo-inositol catabolism protein IolE3e-0652.4
NC_015947:1142206:115707511570751157971897Burkholderia sp. JV3 chromosome, complete genomexylose isomerase domain-containing protein5e-0651.6
NC_016590:1380092:139937013993701400245876Burkholderia sp. YI23 chromosome 3, complete sequencexylose isomerase domain-containing protein6e-0651.6
NC_015580:1302000:1324167132416713260291863Novosphingobium sp. PP1Y, complete genome4-hydroxyphenylpyruvate dioxygenase6e-0651.6