Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2477854 Pseudomonas mendocina ymp, complete genome

Start: 2477854, End: 2478813, Length: 960

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:3088866:312118031211803122172993Pseudomonas aeruginosa DK2 chromosome, complete genomephage integrase family protein2e-173608
NC_015410:2698572:271550727155072716487981Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase family protein6e-170596
NC_018080:3088866:309571130957113096682972Pseudomonas aeruginosa DK2 chromosome, complete genomecointegrate resolution protein S2e-122438
NC_009656:3127240:316451031645103165481972Pseudomonas aeruginosa PA7 chromosome, complete genomecointegrate resolution protein S2e-122438
NC_008463:3168837:318711031871103188081972Pseudomonas aeruginosa UCBPP-PA14, complete genomeCointegrate resolution protein S2e-122438
NC_009659:1984980:198761919876191988593975Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein S4e-105381
NC_009138:1518315:152966615296661530664999Herminiimonas arsenicoxydans, complete genomeunknown prophage; integrase-like protein (Cointegrate resolution protein S) (partial)5e-102370
NC_009659:1923925:196707519670751968007933Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein S1e-101369
NC_017986:5867782:586819858681985869166969Pseudomonas putida ND6 chromosome, complete genomecointegrase7e-101367
NC_020541:2264521:227697222769722277952981Rhodanobacter sp. 2APBS1, complete genomesite-specific recombinase XerC2e-95348
NC_020541:2191600:220585722058572206834978Rhodanobacter sp. 2APBS1, complete genomesite-specific recombinase XerC2e-95348
NC_011662:2374955:238053023805302381471942Thauera sp. MZ1T, complete genomeintegrase family protein5e-94344
NC_008750:2332000:2337459233745923387091251Shewanella sp. W3-18-1, complete genomephage integrase family protein3e-93342
NC_007508:2756945:2770341277034127716151275Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecointegrate resolution protein S8e-93340
NC_016147:623666:6367486367486380191272Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative phage integrase9e-93340
NC_010501:2511887:253435325343532535288936Pseudomonas putida W619, complete genomeintegrase family protein5e-90331
NC_013166:1341575:135602813560281356969942Kangiella koreensis DSM 16069, complete genomeintegrase family protein8e-90330
NC_007507:101887:123354123354124199846Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative cointegrate resolution protein S3e-74278
NC_007507:101887:104425104425105138714Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative cointegrate resolution protein S1e-62239
NC_013958:29548:341623416235157996Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequenceintegrase domain protein SAM domain protein9e-51200
NC_009656:3127240:314265631426563143531876Pseudomonas aeruginosa PA7 chromosome, complete genomecointegrase8e-49194
NC_008573:195317:2039462039462049681023Shewanella sp. ANA-3 plasmid 1, complete sequencephage integrase family protein2e-44179
NC_011138:3182807:3198680319868031996901011Alteromonas macleodii 'Deep ecotype', complete genomePhage integrase4e-44178
NC_016812:258500:2835232835232845601038Sinorhizobium fredii HH103, complete genomeintegrase family protein5e-42171
NC_008739:41793:6420664206653481143Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequencephage integrase family protein1e-40167
NC_011894:983572:995769995769996758990Methylobacterium nodulans ORS 2060, complete genomeintegrase family protein3e-34145
NC_013206:21288:386753867539646972Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446integrase family protein3e-26119
NC_010510:409469:416469416469417404936Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein1e-25117
NC_006672:47610:4761047610490581449Gluconobacter oxydans 621H plasmid pGOX1, complete sequenceIntegrase-like protein4e-23108
NC_012988:3288253:330339033033903304355966Methylobacterium extorquens DM4, complete genomeintegrase7e-22104
NC_019012:61360:825028250283473972Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequenceIntegrase/recombinase xerD-like protein2e-20100
NC_013211:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020, completephage DNA recombinase1e-20100
NC_017105:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_020,phage DNA recombinase1e-20100
NC_017113:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-020, completephage DNA recombinase1e-20100
NC_017118:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-020, completephage DNA recombinase1e-20100
NC_017122:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-020, completephage DNA recombinase1e-20100
NC_017126:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-020, completephage DNA recombinase1e-20100
NC_017131:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-020, completephage DNA recombinase1e-20100
NC_017149:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020, completephage DNA recombinase1e-20100
NC_010511:3674178:372811937281193729042924Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein4e-1892
NC_013732:136673:143650143650144639990Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequenceintegrase family protein1e-1790.5
NC_013235:3129384:313222031322203133188969Nakamurella multipartita DSM 44233, complete genomeintegrase family protein2e-1686.7
NC_007677:771168:8244758244758265382064Salinibacter ruber DSM 13855, complete genomePhage integrase, N-terminal SAM-like domain protein2e-1686.3
NC_010510:388885:3984003984003994611062Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein4e-1685.5
NC_011887:110618:1319371319371329981062Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completeintegrase family protein5e-1685.1
NC_014541:2122788:212976021297602130719960Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein5e-1582
NC_012988:2455807:2500951250095125021231173Methylobacterium extorquens DM4, complete genomeintegrase/recombinase protein2e-1377
NC_014032:825793:9156479156479177042058Salinibacter ruber M8 chromosome, complete genometyrosine recombinase XerD2e-1376.3
NC_010162:1767296:178052317805231781320798Sorangium cellulosum 'So ce 56', complete genomeintegrase-like protein3e-1376.3
NC_007507:101887:104170104170104373204Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,cointegrate resolution protein S fragment5e-1375.5
NC_017986:5797044:5815353581535358164681116Pseudomonas putida ND6 chromosome, complete genomephage integrase1e-1274.3
NC_017075:2733898:2742785274278527438431059Rubrivivax gelatinosus IL144, complete genomeintegrase family protein3e-1273.2
NC_014210:2597000:2611347261134726125881242Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integrase family protein2e-1273.2
NC_018524:4848154:4876338487633848775551218Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomephage integrase family protein2e-1273.2
NC_010162:1767296:177939417793941780293900Sorangium cellulosum 'So ce 56', complete genomeintegrase-like protein6e-1272
NC_011758:247666:2655772655772666381062Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeintegrase family protein6e-1271.6
NC_007333:1743890:1790694179069417917251032Thermobifida fusca YX, complete genomeputative integrase/recombinase7e-1271.6
NC_003037:1245645:1264010126401012651671158Sinorhizobium meliloti 1021 plasmid pSymA, complete sequencepossible integrase-like protein4e-1168.9
NC_008536:8541267:856873485687348569168435Solibacter usitatus Ellin6076, complete genomehypothetical protein9e-1167.8
NC_009621:389181:3891813891813903561176Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequencephage integrase family protein2e-1066.6
NC_010943:2499092:251503325150332515743711Stenotrophomonas maltophilia K279a, complete genomeputative integrase3e-1065.9
NC_007722:2172000:2192258219225821934601203Erythrobacter litoralis HTCC2594, complete genomeIntegrase-like protein2e-0963.5
NC_011071:2207385:2213586221358622146651080Stenotrophomonas maltophilia R551-3, complete genomeintegrase family protein3e-0962.8
NC_010943:2499092:2500946250094625021151170Stenotrophomonas maltophilia K279a, complete genomeputative integrase4e-0962.4
NC_008269:577111:5820615820615832601200Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable integrase4e-0755.8
NC_009656:3127240:3143692314369231447921101Pseudomonas aeruginosa PA7 chromosome, complete genomephage integrase6e-0755.1
NC_015952:171707:1861581861581877201563Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, completeRecombination endonuclease VII3e-0652.8
NC_013174:1366786:1369043136904313700501008Jonesia denitrificans DSM 20603, complete genomeintegrase family protein4e-0652.4
NC_013956:4490000:449623744962374497139903Pantoea ananatis LMG 20103 chromosome, complete genomeCre4e-0652.4
NC_016817:185000:1914351914351924721038Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequenceCre recombinase5e-0652
NC_016628:193000:215655215655216623969Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceDNA integration/recombination/inversion protein7e-0651.6