Pre_GI: BLASTP Hits

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Query: NC_009089:478328:506953 Clostridium difficile 630, complete genome

Start: 506953, End: 507303, Length: 351

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012470:1390285:141542014154201415770351Streptococcus equi subsp. zooepidemicus, complete genomehypothetical protein1e-47187
NC_016630:1247251:127189112718911272241351Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein6e-46182
NC_009089:2150062:217142321714232171773351Clostridium difficile 630, complete genomeputative conjugative transposon mobilization protein1e-45181
NC_013895:1332832:134987013498701350226357Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein1e-43174
NC_012471:1197534:123388512338851234253369Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon mobilization protein1e-1582
NC_015977:3215770:326286832628683263575708Roseburia hominis A2-183 chromosome, complete genomemobilization protein1e-0961.6
NC_018867:10238:464674646746802336Dehalobacter sp. CF chromosome, complete genomehypothetical protein1e-0858.9
NC_016048:2873669:288258828825882882926339Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-0858.2
NC_009089:1283000:129276112927611293090330Clostridium difficile 630, complete genomeputative mobilization protein6e-0856.2
NC_014828:501342:502562502562502897336Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein1e-0755.1
NC_015977:3011177:302903030290303029386357Roseburia hominis A2-183 chromosome, complete genomemobilization protein2e-0754.3
NC_016630:434500:436425436425436766342Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein3e-0753.5
NC_014828:2038692:204719620471962047534339Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein7e-0752.8
NC_004668:2198027:222285422228542223192339Enterococcus faecalis V583, complete genomehypothetical protein3e-0650.4