Pre_GI Gene

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Host: NC_009089 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009089:2150062 Clostridium difficile 630, complete genome

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2136229218593049702BLASTP
21498482150081234hypothetical protein
215006221516421581putative cell surface proteinQuickGO ontologyBLASTP
215173821534441707conjugative transposon DNA topoisomeraseQuickGO ontologyBLASTP
21535282153713186putative conjugative transposon regulatory proteinQuickGO ontologyBLASTP
215374721547931047putative conjugative transposon conserved hypothetical proteinQuickGO ontologyBLASTP
21549042155710807conjugative transposon O-methyltransferaseQuickGO ontologyBLASTP
215576921648049036putative conjugative transposon DNA recombination proteinQuickGO ontologyBLASTP
21648292165506678putative conjugative transposon conserved hypothetical proteinQuickGO ontologyBLASTP
21656462165876231putative conjugative transposon egulatory proteinQuickGO ontologyBLASTP
216607921677011623putative conjugative transposon DNA recombination proteinQuickGO ontologyBLASTP
216769821687651068putative conjugative transposon conserved hypothetical proteinQuickGO ontologyBLASTP
21687932169254462conjugative transposon conserved hypothetical proteinQuickGO ontologyBLASTP
21692442170050807conjugative transposon conserved hypothetical proteinQuickGO ontologyBLASTP
217008621714171332putative conjugative transposon mobilization proteinQuickGO ontologyBLASTP
21714232171773351putative conjugative transposon mobilization proteinQuickGO ontologyBLASTP
217209721732541158hypothetical proteinBLASTP
21732762173428153hypothetical proteinBLASTP
21734152174311897putative iron-sulfur-binding membrane proteinQuickGO ontologyBLASTP