Pre_GI: BLASTP Hits

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Query: NC_009089:2150062:2173415 Clostridium difficile 630, complete genome

Start: 2173415, End: 2174311, Length: 897

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013895:66641:709107091071854945Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete4Fe-4S binding domain protein8e-101367
NC_014363:2035141:203514120351412036049909Olsenella uli DSM 7084 chromosome, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein7e-78290
NC_010001:232976:245608245608246474867Clostridium phytofermentans ISDg, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein1e-74279
NC_009922:868262:868262868262869125864Alkaliphilus oremlandii OhILAs, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein7e-74277
NC_015388:2211828:223399722339972234875879Desulfobacca acetoxidans DSM 11109 chromosome, complete genome4Fe-4S ferredoxin iron-sulfur binding domain-containing protein9e-49194
NC_014122:726070:748696748696749379684Methanocaldococcus infernus ME chromosome, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein8e-1891.3
NC_000909:657904:675147675147675887741Methanocaldococcus jannaschii DSM 2661, complete genomehypothetical protein1e-1480.9
NC_009635:905768:912381912381913103723Methanococcus aeolicus Nankai-3 chromosome, complete genome4Fe-4S ferredoxin1e-1480.9
NC_016751:1299738:1321580132158013231631584Marinitoga piezophila KA3 chromosome, complete genomehypothetical protein2e-1376.6
NC_015737:449914:465283465283466101819Clostridium sp. SY8519, complete genomepolyferredoxin3e-1169.3
NC_017187:325229:335544335544336350807Arcobacter butzleri ED-1, complete genomequinol dehydrogenase membrane component7e-1168.2
NC_007298:1666480:167782116778211678804984Dechloromonas aromatica RCB, complete genomeFerredoxin-type protein, NapH/MauN family2e-1066.6
NC_015737:449914:473574473574474548975Clostridium sp. SY8519, complete genomehypothetical protein3e-1066.2
NC_014222:186876:187719187719188441723Methanococcus voltae A3 chromosome, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein3e-1065.9
NC_011601:1039500:1039534103953410406071074Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome(4Fe-4S)-binding protein5e-1065.5
NC_014828:2038692:208033120803312081044714Ethanoligenens harbinense YUAN-3 chromosome, complete genome4Fe-4S ferredoxin, iron-sulfur binding protein7e-0961.6
NC_003901:1268995:128872712887271289260534Methanosarcina mazei Go1, complete genomeIron-sulfur-binding protein7e-0961.2
NC_020389:1083517:109957010995701100103534Methanosarcina mazei Tuc01, complete genomeIron-sulfur-binding protein8e-0961.2
NC_013939:1841890:184189018418901842699810Deferribacter desulfuricans SSM1, complete genomeperiplasmic nitrate reductase NapH8e-0961.2
NC_014253:933261:949374949374949988615Methanohalobium evestigatum Z-7303 chromosome, complete genome4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein3e-0859.7
NC_011146:1429836:1429836142983614310591224Geobacter bemidjiensis Bem, complete genome4Fe-4S ferredoxin, iron-sulfur binding protein9e-0857.8
NC_008599:426078:426078426078426974897Campylobacter fetus subsp. fetus 82-40, complete genomeferredoxin-type protein, NapH/MauN family1e-0757.4
NC_015557:583475:584871584871585701831Hydrogenobaculum sp. 3684 chromosome, complete genomeputative ferredoxin-type protein, NapH/MauN family5e-0755.5
NC_015587:583530:584926584926585756831Hydrogenobaculum sp. SHO chromosome, complete genomepolyferredoxin-like protein5e-0755.5
NC_020411:583503:584899584899585729831Hydrogenobaculum sp. HO, complete genomeputative ferredoxin-type protein, NapH/MauN family5e-0755.5
NC_013173:1259898:1274599127459912761581560Desulfomicrobium baculatum DSM 4028, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein7e-0754.7
NC_009253:529494:531933531933532631699Desulfotomaculum reducens MI-1 chromosome, complete genome4Fe-4S ferredoxin2e-0653.1
NC_013716:1138441:1167336116733611684151080Citrobacter rodentium ICC168, complete genomeputative electron transport protein3e-0652.8
NC_020291:902635:9177929177929193661575Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome4Fe-4S binding domain/FMN-binding domain-containing protein6e-0652
NC_011769:3434744:3434744343474434367141971Desulfovibrio vulgaris str. 'Miyazaki F', complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein7e-0651.6
NC_009614:821247:8246618246618261871527Bacteroides vulgatus ATCC 8482 chromosome, complete genomeferredoxin-type protein7e-0651.6