Pre_GI: BLASTP Hits

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Query: NC_009089:2150062:2154904 Clostridium difficile 630, complete genome

Start: 2154904, End: 2155710, Length: 807

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:2150062:21362292136229218593049702Clostridium difficile 630, complete genome1e-158558
NC_011837:56000:738477384774674828Clostridium kluyveri NBRC 12016, complete genomehypothetical protein8e-31134
NC_009706:56000:738477384774674828Clostridium kluyveri DSM 555 chromosome, complete genomepolyketide methyltransferase8e-31134
NC_011830:633195:655461655461656294834Desulfitobacterium hafniense DCB-2, complete genomeO-methyltransferase domain protein6e-28124
NC_012587:3613162:362953036295303630402873Rhizobium sp. NGR234, complete genomepredicted polyketide synthesis O-methyltransferase, TcmP type protein3e-1995.5
NC_003552:4277937:429593642959364296760825Methanosarcina acetivorans C2A, complete genomehypothetical protein3e-1892.4
NC_015589:3340500:335107833510783351878801Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein4e-1788.6
NC_013162:811763:829010829010829813804Capnocytophaga ochracea DSM 7271, complete genomeO-methyltransferase domain protein4e-1685.5
NC_011026:1181940:118194011819401182770831Chloroherpeton thalassium ATCC 35110, complete genomeO-methyltransferase domain protein2e-1583.2
NC_011837:56000:747197471975510792Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-1479.7
NC_009706:56000:747197471975510792Clostridium kluyveri DSM 555 chromosome, complete genomepolyketide methyltransferase2e-1479.7
NC_007645:713930:729382729382730182801Hahella chejuensis KCTC 2396, complete genomeO-Methyltransferase involved in polyketide biosynthesis3e-1375.9
NC_014643:195948:199903199903200718816Rothia dentocariosa ATCC 17931 chromosome, complete genometetracenomycin polyketide synthesis O-methyltransferase TcmP4e-1375.1
NC_011832:1122268:114111911411191141937819Candidatus Methanosphaerula palustris E1-9c, complete genomeO-methyltransferase domain protein1e-1273.9
NC_008786:2729635:274772427477242748536813Verminephrobacter eiseniae EF01-2, complete genomeO-methyltransferase domain protein2e-1272.8
NC_018681:9262000:928331892833189284133816Nocardia brasiliensis ATCC 700358 chromosome, complete genomeO-methyltransferase domain-containing protein2e-1272.8
NC_010612:2777687:278525327852532786098846Mycobacterium marinum M, complete genomeconserved hypothetical O-methyltransferase4e-1272