Pre_GI: BLASTP Hits

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Query: NC_009089:2150062:2150062 Clostridium difficile 630, complete genome

Start: 2150062, End: 2151642, Length: 1581

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:2150062:21362292136229218593049702Clostridium difficile 630, complete genome0725
NC_013316:2033906:2094070209407020956111542Clostridium difficile R20291, complete genomeputative cell surface protein6e-131468
NC_009089:478328:4918094918094933501542Clostridium difficile 630, complete genomeputative cell surface protein7e-129461
NC_012471:1197534:1254671125467112561341464Streptococcus equi subsp. equi 4047, complete genomemembrane protein6e-128457
NC_013515:715009:7231157231157246711557Streptobacillus moniliformis DSM 12112, complete genomehypothetical protein7e-128457
NC_012471:719000:7334187334187349651548Streptococcus equi subsp. equi 4047, complete genomemembrane protein7e-127454
NC_012470:1390285:1430215143021514317441530Streptococcus equi subsp. zooepidemicus, complete genomemembrane protein1e-120433
NC_016630:1247251:128518012851801286037858Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein3e-53209
NC_013164:67500:772807728078143864Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequencehypothetical protein1e-20101