Pre_GI: BLASTP Hits

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Query: NC_009089:1:23561 Clostridium difficile 630, complete genome

Start: 23561, End: 24766, Length: 1206

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:1:2332123321245261206Clostridium difficile R20291, complete genomeputative glycosyl transferase0754
NC_014614:2500301:2521812252181225229181107Clostridium sticklandii, complete genomeputative glycosyl transferase precursor3e-92338
NC_011830:4645453:4648433464843346495511119Desulfitobacterium hafniense DCB-2, complete genomeMonogalactosyldiacylglycerol synthase2e-40166
NC_007907:2306561:2327978232797823291261149Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-37157
NC_014377:1871333:1875640187564018767881149Thermosediminibacter oceani DSM 16646 chromosome, complete genomeMonogalactosyldiacylglycerol synthase4e-32139
NC_007503:919808:9220419220419231441104Carboxydothermus hydrogenoformans Z-2901, complete genomeputative glycosyl transferase2e-31137
NC_015856:4975815:4991268499126849925001233Collimonas fungivorans Ter331 chromosome, complete genomeUDP-N-acetylglucosamine/LPS N-acetylglucosamine transferase-like protein4e-31136
NC_015635:5222000:5225129522512952265651437Microlunatus phosphovorus NM-1, complete genomeputative glycosyltransferase5e-31135
NC_014650:3589604:3589604358960435907401137Geobacillus sp. Y4.1MC1 chromosome, complete genomemonogalactosyldiacylglycerol synthase1e-30134
NC_015660:3643370:3644615364461536457511137Geobacillus thermoglucosidasius C56-YS93 chromosome, completeMonogalactosyldiacylglycerol synthase1e-30134
NC_015977:255029:2781972781972793691173Roseburia hominis A2-183 chromosome, complete genomemonogalactosyldiacylglycerol synthase2e-29130
NC_005125:3420270:3434665343466534358101146Gloeobacter violaceus PCC 7421, complete genomehypothetical protein3e-29129
NC_014221:3137952:3152598315259831538031206Truepera radiovictrix DSM 17093 chromosome, complete genomeMonogalactosyldiacylglycerol synthase5e-26119
NC_006177:835459:8371228371228383211200Symbiobacterium thermophilum IAM 14863, complete genomeputative UDP-glucuronosyltransferase6e-25115
NC_009089:3142976:3161317316131731624141098Clostridium difficile 630, complete genomeputative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase8e-23108
NC_013316:3056925:3075090307509030761871098Clostridium difficile R20291, complete genomeputative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase3e-22106
NC_011662:2320100:2339769233976923425042736Thauera sp. MZ1T, complete genomeGlycosyltransferase 28 domain protein9e-1685.1
NC_009953:691686:7098477098477109951149Salinispora arenicola CNS-205 chromosome, complete genomeUDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like protein7e-1582
NC_015656:4879904:4884510488451048856791170Frankia symbiont of Datisca glomerata chromosome, complete genomeUDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like protein2e-1170.9
NC_009380:725870:7288637288637300561194Salinispora tropica CNB-440 chromosome, complete genomeUDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like protein5e-1065.9
NC_015638:591964:6030266030266041321107Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeUDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase6e-0962.4
NC_015703:1992000:2014192201419220152861095Runella slithyformis DSM 19594 chromosome, complete genomeUDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase1e-0757.8