Pre_GI: BLASTP Hits

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Query: NC_008268:7485710:7490210 Rhodococcus sp. RHA1, complete genome

Start: 7490210, End: 7491409, Length: 1200

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013235:3812838:3815932381593238171131182Nakamurella multipartita DSM 44233, complete genomeintegrase family protein2e-155548
NC_013235:4091185:4105058410505841062391182Nakamurella multipartita DSM 44233, complete genomeintegrase family protein2e-155548
NC_013235:1325975:1336864133686413380451182Nakamurella multipartita DSM 44233, complete genomeintegrase family protein2e-155548
NC_013235:4045589:4059933405993340611141182Nakamurella multipartita DSM 44233, complete genomeintegrase family protein2e-155548
NC_014814:1397429:1412700141270014138811182Mycobacterium sp. Spyr1 chromosome, complete genomesite-specific recombinase XerD2e-149528
NC_008726:549102:5511415511415523401200Mycobacterium vanbaalenii PYR-1, complete genomephage integrase family protein4e-61235
NC_014550:7560:2566025660270091350Arthrobacter arilaitensis Re117, complete genome1e-35150
NC_012803:2195808:2235293223529322364801188Micrococcus luteus NCTC 2665, complete genomesite-specific recombinase, integrase family3e-33142
NC_008705:1790222:1820156182015618212501095Mycobacterium sp. KMS, complete genomephage integrase family protein4e-30132
NC_011773:4296082:4296082429608242971671086Bacillus cereus AH820 chromosome, complete genometransposase A6e-29129
NC_019697:1879769:1885406188540618864881083Chamaesiphon minutus PCC 6605, complete genomesite-specific recombinase XerD1e-27124
NC_012803:691215:714743714743715681939Micrococcus luteus NCTC 2665, complete genomesite-specific recombinase, integrase family1e-26121
NC_009328:3504454:3529966352996635311051140Geobacillus thermodenitrificans NG80-2 chromosome, complete genometransposition regulatory protein TnpA4e-22106
NC_009328:2161116:2201942220194222030811140Geobacillus thermodenitrificans NG80-2 chromosome, complete genometransposition regulatory protein TnpA4e-22106
NC_010520:2101515:2101515210151521026451131Clostridium botulinum A3 str. Loch Maree, complete genomesite-specific recombinase2e-1996.7
NC_010572:3878660:3886592388659238877821191Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative phage integrase5e-1582.4
NC_002662:30922:4854348543497271185Lactococcus lactis subsp. lactis Il1403, complete genomeintegrase2e-1170.5
NC_013929:10133902:1014000910140009101411691161Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-0963.5
NC_013921:1915377:192886319288631929738876Thermoanaerobacter italicus Ab9 chromosome, complete genomeintegrase family protein5e-0962.8
NC_012526:1576775:1583384158338415847181335Deinococcus deserti VCD115, complete genomeputative Integrase5e-0962.4
NC_015433:1998427:2011610201161020127821173Streptococcus suis ST3 chromosome, complete genomeintegrase family protein6e-0962.4
NC_014657:2127500:214107121410712141946876Caldicellulosiruptor owensensis OL chromosome, complete genomeintegrase family protein1e-0861.6
NC_014335:2274774:229993922999392300787849Bacillus cereus biovar anthracis str. CI chromosome, completeDNA integration/recombination/invertion protein2e-0860.8
NC_015558:1485762:1487654148765414888141161Streptococcus parauberis KCTC 11537 chromosome, complete genomeprophage Sa05, site-specific recombinase phage integrase family protein4e-0859.7
NC_008271:119957:1382081382081393381131Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprobable integrase/recombinase, XerC and XerD family6e-0858.9
NC_009338:2042664:2064252206425220656611410Mycobacterium gilvum PYR-GCK chromosome, complete genomephage integrase family protein2e-0757.4
NC_015958:2174731:219018821901882191063876Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeintegrase family protein3e-0756.6
NC_010380:254088:2540882540882552541167Streptococcus pneumoniae Hungary19A-6, complete genomeprophage Sa05, site-specific recombinase, phage integrase family5e-0755.8
NC_012469:198096:1980961980961992621167Streptococcus pneumoniae Taiwan19F-14, complete genomeprophage Sa05, site-specific recombinase, phage integrase family5e-0755.8
NC_020387:796253:8023368023368034931158Dehalococcoides mccartyi BTF08, complete genomesite-specific recombinase, phage integrase family3e-0653.1