Pre_GI: BLASTP Hits

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Query: NC_008262:67711:68750 Clostridium perfringens SM101, complete genome

Start: 68750, End: 70006, Length: 1257

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:64678:6573365733669891257Clostridium perfringens ATCC 13124, complete genomehypothetical protein0756
NC_003366:64908:6596065960672161257Clostridium perfringens str. 13, complete genomehypothetical protein0739
NC_007907:5297477:5311628531162853128631236Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-120432
NC_018866:2033960:2053484205348420547221239Dehalobacter sp. DCA chromosome, complete genomeHTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning4e-120431
NC_018867:2063741:2083265208326520845031239Dehalobacter sp. CF chromosome, complete genomeHTH domain of SpoOJ/ParA/ParB/RepB family protein4e-120431
NC_014328:85290:9006390063913131251Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein5e-118424
NC_020291:6274030:6278542627854262797981257Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein2e-113409
NC_010674:3619722:3634448363444836357041257Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein5e-112404
NC_013768:29324:3320333203344441242Listeria monocytogenes 08-5923, complete genomehypothetical protein6e-102371
NC_013766:29324:3320333203344441242Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein6e-102371
NC_015501:1669521:1689039168903916902831245Porphyromonas asaccharolytica DSM 20707 chromosome, completeUncharacterized conserved protein UCP0335634e-94345
NC_013642:1317114:1317114131711413183341221Thermotoga naphthophila RKU-10, complete genomehypothetical protein3e-73276
NC_009486:1293510:1293510129351012947301221Thermotoga petrophila RKU-1 chromosome, complete genomehypothetical protein3e-73276
NC_000853:1480478:1506334150633415075541221Thermotoga maritima MSB8, complete genomehypothetical protein1e-73276
NC_010483:1385000:1413443141344314146631221Thermotoga sp. RQ2, complete genomehypothetical protein1e-71270
NC_011832:2760000:2776684277668427779401257Candidatus Methanosphaerula palustris E1-9c, complete genomehypothetical protein3e-63242
NC_014654:2180994:2183488218348821847711284Halanaerobium sp. 'sapolanicus' chromosome, complete genomeUncharacterized conserved protein UCP0335631e-26121
NC_014652:666227:6821656821656834391275Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein1e-26121
NC_011296:229494:2509262509262521611236Thermodesulfovibrio yellowstonii DSM 11347, complete genomehypothetical protein2e-24113
NC_018750:1591895:1594609159460915959011293Streptomyces venezuelae ATCC 10712, complete genomeSpoOJ or ParA or ParB or repB family protein5e-24112
NC_015949:2002752:2005999200599920072731275Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomehypothetical protein3e-23109
NC_007503:919808:9404489404489417101263Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein2e-22107
NC_014314:576465:6146556146556170512397Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completehypothetical protein9e-21101
NC_015672:2071141:2071141207114120723881248Flexistipes sinusarabici DSM 4947 chromosome, complete genomehypothetical protein1e-20101
NC_014758:310394:3168893168893181331245Calditerrivibrio nitroreducens DSM 19672 chromosome, completehypothetical protein1e-20100
NC_013939:106681:1240501240501252971248Deferribacter desulfuricans SSM1, complete genomehypothetical protein4e-2099.4
NC_013510:2521186:2539790253979025411541365Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-1790.9