Pre_GI: BLASTP Hits

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Query: NC_008261:967973:972063 Clostridium perfringens ATCC 13124, complete genome

Start: 972063, End: 972437, Length: 375

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011660:2509362:251589025158902516279390Listeria monocytogenes HCC23 chromosome, complete genomehypothetical protein6e-48189
NC_015975:1936504:194992519499251950305381Lactobacillus ruminis ATCC 27782 chromosome, complete genomehypothetical protein2e-45180
NC_006814:403723:442289442289442657369Lactobacillus acidophilus NCFM, complete genomehypothetical protein7e-34142
NC_015602:1339067:134388913438891344257369Lactobacillus kefiranofaciens ZW3 chromosome, complete genomehypothetical protein2e-33140
NC_014106:419511:453485453485453853369Lactobacillus crispatus ST1, complete genomeManO3e-33140
NC_014724:439594:478031478031478399369Lactobacillus amylovorus GRL 1112 chromosome, complete genomehypothetical protein8e-33139
NC_015214:437733:477646477646478014369Lactobacillus acidophilus 30SC chromosome, complete genomehypothetical protein8e-33139
NC_018528:1681060:168695916869591687327369Lactobacillus helveticus R0052 chromosome, complete genomehypothetical protein1e-32138
NC_008530:1775841:177965317796531780015363Lactobacillus gasseri ATCC 33323, complete genomehypothetical protein3e-29126
NC_005362:1870620:187585018758501876212363Lactobacillus johnsonii NCC 533, complete genomehypothetical protein3e-29126
NC_013504:1648551:165484116548411655203363Lactobacillus johnsonii FI9785 chromosome, complete genomehypothetical protein6e-29125
NC_013171:228356:229294229294229641348Anaerococcus prevotii DSM 20548, complete genomeprotein of unknown function DUF9562e-26117
NC_013192:469771:483062483062483439378Leptotrichia buccalis DSM 1135, complete genomehypothetical protein1e-1581.6