Pre_GI: BLASTP Hits

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Query: NC_008261:1249595:1259269 Clostridium perfringens ATCC 13124, complete genome

Start: 1259269, End: 1261191, Length: 1923

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014829:3964616:3985548398554839874491902Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeGlycoside hydrolase, family 20, catalytic core4e-136485
NC_013406:2207520:2210391221039122123071917Paenibacillus sp. Y412MC10 chromosome, complete genomeglycoside hydrolase, family 20, catalytic core6e-127454
NC_004193:3325612:3344132334413233460481917Oceanobacillus iheyensis HTE831, complete genomehypothetical protein3e-122439
NC_012468:2069238:2073067207306720749471881Streptococcus pneumoniae 70585, complete genomeN-acetyl-beta-D-glucosaminidase4e-113409
NC_003098:1925783:1929900192990019317801881Streptococcus pneumoniae R6, complete genomehypothetical protein2e-112407
NC_008533:1935500:1937402193740219392821881Streptococcus pneumoniae D39, complete genomeglycosyl hydrolase-related protein2e-112407
NC_012467:1997484:2003483200348320053631881Streptococcus pneumoniae P1031, complete genomeN-acetyl-beta-D-glucosaminidase1e-112407
NC_012466:2008000:2011832201183220137121881Streptococcus pneumoniae JJA, complete genomeN-acetyl-beta-D-glucosaminidase3e-112406
NC_014498:2127000:2128789212878921306691881Streptococcus pneumoniae 670-6B chromosome, complete genomeN-acetyl-beta-D-glucosaminidase5e-112405
NC_010582:2091138:2097307209730720991871881Streptococcus pneumoniae CGSP14, complete genomeglycosyl hydrolase-related protein6e-112405
NC_013853:2048867:2048867204886720507471881Streptococcus mitis B6, complete genomeglycosyl hydrolase family 20 (GH20) protein6e-112405
NC_011900:2107133:2112435211243521143151881Streptococcus pneumoniae ATCC 700669, complete genomeN-acetyl-beta-D-glucosaminidase7e-112404
NC_011661:203929:2193102193102210251716Dictyoglomus turgidum DSM 6724, complete genomeGlycoside hydrolase, family 20, catalytic core2e-30134
NC_017095:269165:2709432709432728111869Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeN-acetyl-beta-hexosaminidase4e-1377
NC_009718:518873:5243355243355262151881Fervidobacterium nodosum Rt17-B1, complete genomeglycoside hydrolase family protein4e-1377
NC_014364:1263427:1266296126629612680891794Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGlycoside hydrolase, family 20, catalytic core2e-1275.1
NC_010723:1465097:1465097146509714667281632Clostridium botulinum E3 str. Alaska E43, complete genomebeta-hexosaminidase9e-1065.9
NC_015064:2421034:2424841242484124270392199Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGlycoside hydrolase, family 20, catalytic core1e-0965.1
NC_009614:561279:5687305687305708112082Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase1e-0759.3
NC_015846:445000:4582634582634605902328Capnocytophaga canimorsus Cc5 chromosome, complete genomebeta-N-acetylhexosaminidase4e-0757
NC_006177:324363:3401913401913421281938Symbiobacterium thermophilum IAM 14863, complete genomeN-acetyl-beta-hexosaminidase4e-0757
NC_012483:30784:4903249032512482217Acidobacterium capsulatum ATCC 51196, complete genomeglycosyl hydrolase, family 20, catalytic domain protein1e-0655.5