Pre_GI: BLASTP Hits

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Query: NC_008258:1784637:1801837 Shigella flexneri 5 str. 8401, complete genome

Start: 1801837, End: 1802202, Length: 366

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1835108:185499918549991855421423Shigella flexneri 2002017 chromosome, complete genomeIS91 orf1e-58224
NC_004337:1783645:180245618024561802878423Shigella flexneri 2a str. 301, complete genomeputative IS91 ORF21e-58224
NC_009786:43331:588165881659238423Escherichia coli E24377A plasmid pETEC_80, complete sequenceIS91, orf23e-56216
NC_009786:43331:540985409854520423Escherichia coli E24377A plasmid pETEC_80, complete sequenceIS91, orf23e-56216