Pre_GI: BLASTP Hits

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Query: NC_008149:2652825:2671318 Yersinia pestis Nepal516, complete genome

Start: 2671318, End: 2671602, Length: 285

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003143:1973867:197844019784401978724285Yersinia pestis CO92, complete genomehypothetical protein4e-49192
NC_010159:1710268:172866417286641728948285Yersinia pestis Angola, complete genomeYciI domain protein4e-49192
NC_020211:2012480:201594720159472016231285Serratia marcescens WW4, complete genomeYCII-like protein3e-25113
NC_016776:3973428:398667439866743986961288Bacteroides fragilis 638R, complete genomehypothetical protein1e-22105
NC_003228:3934770:394801739480173948304288Bacteroides fragilis NCTC 9343, complete genomehypothetical protein1e-22105
NC_006347:4031000:404426240442624044549288Bacteroides fragilis YCH46, complete genomehypothetical protein1e-22105
NC_012796:2683711:269786826978682698155288Desulfovibrio magneticus RS-1, complete genomehypothetical protein9e-2199
NC_014153:2125551:214552921455292145810282Thiomonas intermedia K12 chromosome, complete genomeYCII-related protein2e-1788.2
NC_016514:2713834:273279727327972733090294Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein7e-1785.9
NC_011283:785973:806775806775807068294Klebsiella pneumoniae 342 chromosome, complete genomeYciL domain-containing protein9e-1785.5
NC_014121:1589389:160875716087571609050294Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-1684.7
NC_015724:129331:143159143159143455297Cupriavidus necator N-1 plasmid BB2p, complete sequencehypothetical protein3e-1580.5
NC_011294:1085447:110206911020691102362294Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-1580.1
NC_011274:1094379:111098211109821111287306Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-1580.1
NC_016831:1905289:191381319138131914091279Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-1579.3
NC_011205:1186097:120270012027001202978279Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853GTP cyclohydrolase II7e-1579.3
NC_013093:832971:836836836836837138303Actinosynnema mirum DSM 43827, complete genomeYCII-related protein3e-1477.4
NC_013508:2870954:288828628882862888582297Edwardsiella tarda EIB202, complete genomehypothetical protein1e-1375.1
NC_014958:1268559:128658812865881286893306Deinococcus maricopensis DSM 21211 chromosome, complete genomeYCII-like protein4e-1373.6
NC_012779:2957000:297049529704952970791297Edwardsiella ictaluri 93-146, complete genomehypothetical protein6e-1372.8
NC_014960:1380500:139806213980621398364303Anaerolinea thermophila UNI-1, complete genomehypothetical protein7e-0855.8
NC_014098:2735500:274793827479382748225288Bacillus tusciae DSM 2912 chromosome, complete genomeYCII-related protein8e-0752.4
NC_008601:1404933:142110814211081421392285Francisella tularensis subsp. novicida U112, complete genomehypothetical protein9e-0752.4
NC_008543:127675:133809133809134117309Burkholderia cenocepacia HI2424 chromosome 2, complete sequencehypothetical protein6e-0649.7
NC_008061:2106848:213565421356542135962309Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein6e-0649.7