Pre_GI: BLASTP Hits

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Query: NC_007953:1088933:1102426 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1102426, End: 1103058, Length: 633

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010552:2331486:234899723489972349671675Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, TetR family3e-23108
NC_008786:18688:243492434924993645Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, TetR family5e-23107
NC_010125:148500:164714164714165385672Gluconacetobacter diazotrophicus PAl 5, complete genometranscriptional regulator, TetR family9e-23106
NC_010515:2037825:203968620396862040360675Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetranscriptional regulator, TetR family1e-21102
NC_012792:627500:631815631815632462648Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, TetR family4e-21101
NC_011000:1262324:129188312918831292545663Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein5e-2097.8
NC_015580:1328361:132836113283611329092732Novosphingobium sp. PP1Y, complete genomeTetR family transcriptional regulator3e-1788.6
NC_017506:1:166661666617247582Marinobacter adhaerens HP15 chromosome, complete genomeTetR family transcriptional regulator4e-1684.7
NC_015172:2986867:302742730274273028068642Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, TetR family1e-1479.3
NC_007644:2452244:245224424522442452852609Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, TetR family4e-1478.2
NC_013385:1007616:100995610099561010600645Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family1e-1376.3
NC_009253:3317533:332094233209423321559618Desulfotomaculum reducens MI-1 chromosome, complete genomeTetR family transcriptional regulator2e-1375.5
NC_014837:2758239:275953327595332760171639Pantoea sp. At-9b chromosome, complete genomeTetR family transcriptional regulator6e-1167.4
NC_011881:89705:917219172192311591Arthrobacter chlorophenolicus A6 plasmid pACHL02, completetranscriptional regulator, TetR family2e-0858.9
NC_009664:4377777:438361543836154384193579Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family6e-0754.3
NC_014228:1336466:133646613364661337143678Xenorhabdus nematophila ATCC 19061, complete genomeputative transcriptional repressor with homeodomain-like DNA binding domain (TetR/AcrR family)2e-0652.8
NC_016111:6175975:619516761951676195745579Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, tetR family (fragment)3e-0652
NC_016818:1795576:183812718381271838744618Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetranscriptional regulator4e-0651.6
NC_011979:773673:796097796097796687591Geobacter sp. FRC-32, complete genometranscriptional regulator, TetR family6e-0650.8