Pre_GI: BLASTP Hits

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Query: NC_007953:1088933:1093452 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1093452, End: 1094384, Length: 933

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010501:4989455:500108250010825002020939Pseudomonas putida W619, complete genomeprotein of unknown function DUF8494e-99361
NC_014539:743523:787171787171788103933Burkholderia sp. CCGE1003 chromosome 1, complete sequencehypothetical protein1e-94346
NC_010501:1868888:189060818906081891534927Pseudomonas putida W619, complete genomeprotein of unknown function DUF8494e-93341
NC_015136:1101725:112883111288311129769939Burkholderia sp. CCGE1001 chromosome 1, complete sequencehypothetical protein5e-91334
NC_014532:2664139:267974926797492680681933Halomonas elongata DSM 2581, complete genomeprotein of unknown function DUF8492e-87322
NC_014006:1365207:137017513701751371101927Sphingobium japonicum UT26S chromosome 1, complete genomehypothetical protein4e-87321
NC_020291:2487575:249940924994092500245837Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein2e-34145
NC_010162:2406976:242131224213122422250939Sorangium cellulosum 'So ce 56', complete genomehypothetical protein4e-33142
NC_009633:337706:356371356371357183813Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein2e-33142
NC_009328:2808897:281860128186012819434834Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein2e-31136
NC_016751:469289:476218476218477036819Marinitoga piezophila KA3 chromosome, complete genomehypothetical protein2e-31136
NC_007948:360199:375107375107375985879Polaromonas sp. JS666, complete genomeprotein of unknown function DUF8493e-31135
NC_009718:203998:213536213536214363828Fervidobacterium nodosum Rt17-B1, complete genomehypothetical protein1e-30133
NC_003454:339345:359705359705360523819Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical cytosolic protein1e-28127
NC_010718:1959517:197313819731381974007870Natranaerobius thermophilus JW/NM-WN-LF, complete genome3-keto-5-aminohexanoate cleavage enzyme7e-29127
NC_010623:188143:211939211939212868930Burkholderia phymatum STM815 chromosome 2, complete sequenceprotein of unknown function DUF8495e-28125
NC_010552:2131021:213102121310212131950930Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function DUF8493e-27122
NC_009616:183772:198192198192199010819Thermosipho melanesiensis BI429 chromosome, complete genomehypothetical protein6e-26118
NC_015160:3749636:376601937660193766846828Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein1e-25117
NC_010003:1126800:115198511519851152806822Petrotoga mobilis SJ95, complete genomeprotein of unknown function DUF8497e-25114
NC_008095:5377000:538789853878985388725828Myxococcus xanthus DK 1622, complete genomehypothetical protein2e-24113
NC_018000:1914945:192305619230561923931876Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein3e-22106
NC_004461:205068:210026210026210928903Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein1e-20100
NC_010511:6067000:607535660753566075742387Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein1e-1997.4
NC_007953:938346:956615956615957532918Burkholderia xenovorans LB400 chromosome 3, complete sequencehypothetical protein3e-1376.3
NC_015723:1047418:1055095105509510561561062Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein1e-1273.9
NC_008699:4443000:446702944670294467940912Nocardioides sp. JS614, complete genomeprotein of unknown function DUF8492e-1273.6
NC_009921:5609770:563986256398625640761900Frankia sp. EAN1pec, complete genomeprotein of unknown function DUF8497e-1271.6
NC_007974:1607500:1619296161929616203541059Ralstonia metallidurans CH34 chromosome 2, complete sequenceprotein of unknown function DUF8492e-0860.5