Pre_GI: BLASTP Hits

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Query: NC_007951:2206263:2226560 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2226560, End: 2227846, Length: 1287

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015578:1940097:1958000195800019608522853Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein2e-56219
NC_015379:4249238:4260187426018742631232937Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Hypothetical protein2e-31137
NC_012792:547967:5668815668815699673087Variovorax paradoxus S110 chromosome 2, complete genomeABC transporter3e-31136
NC_007908:3363902:3363902336390233669883087Rhodoferax ferrireducens T118, complete genomeABC transporter1e-29130
NC_013421:701005:7157687157687184612694Pectobacterium wasabiae WPP163, complete genomeATPase involved in DNA repair5e-26119
NC_009719:1135523:1150159115015911531462988Parvibaculum lavamentivorans DS-1 chromosome, complete genomeSMC domain-containing protein6e-25115
NC_007949:121747:1425561425561452402685Polaromonas sp. JS666 plasmid 1, complete sequencePHP-like2e-22107
NC_012803:1373500:1380197138019713830132817Micrococcus luteus NCTC 2665, complete genomehypothetical protein2e-21103
NC_012796:4075583:4087480408748040902452766Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-20101
NC_008593:555463:5778685778685793911524Clostridium novyi NT, complete genomeATPase involved in DNA repair, putative5e-2099.4
NC_010794:303203:3234653234653262572793Methylacidiphilum infernorum V4, complete genomePHP family phosphoesterase fused to chromosome segregation ATPase8e-1892
NC_013203:202008:2273542273542300412688Atopobium parvulum DSM 20469, complete genomeSMC domain protein2e-1790.5
NC_008340:1733735:1758389175838917612202832Alkalilimnicola ehrlichei MLHE-1, complete genomeSMC domain protein3e-1790.1
NC_008782:3800500:3803852380385238067192868Acidovorax sp. JS42, complete genomeSMC domain protein3e-1790.1
NC_010688:605018:6169076169076197352829Xanthomonas campestris pv. campestris, complete genomehypothetical protein1e-1481.3
NC_003902:624828:6368346368346395452712Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein2e-1480.9
NC_007086:626891:6388976388976416082712Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein2e-1480.9
NC_019902:1863162:1871341187134118740162676Thioalkalivibrio nitratireducens DSM 14787, complete genomeATPase involved in DNA repair6e-1479
NC_008782:2683989:2690690269069026933592670Acidovorax sp. JS42, complete genomehypothetical protein7e-1479
NC_016002:1975000:2006075200607520087292655Pseudogulbenkiania sp. NH8B, complete genomeputative ATPase involved in DNA repair8e-1478.6
NC_009767:2051203:2071069207106920737982730Roseiflexus castenholzii DSM 13941, complete genomeSMC domain protein2e-1377.4
NC_012984:2709148:271970227197022720217516Lactobacillus plantarum JDM1, complete genomehypothetical protein5e-1376.3
NC_015277:4358000:4373540437354043761912652Sphingobacterium sp. 21 chromosome, complete genomeAAA ATPase2e-1273.9
NC_013522:1538994:1557528155752815602062679Thermanaerovibrio acidaminovorans DSM 6589, complete genomeSMC domain protein4e-1273.2
NC_013722:1816561:1852142185214218548172676Xanthomonas albilineans, complete genomehypothetical protein1e-1171.6
NC_007760:3655433:3685692368569236883822691Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein2e-1170.9
NC_015738:1707173:1715681171568117180382358Eggerthella sp. YY7918, complete genomehypothetical protein1e-0654.7
NC_004829:346929:3751813751813767521572Mycoplasma gallisepticum R, complete genomehypothetical protein6e-0652.4