Pre_GI: BLASTP Hits

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Query: NC_007951:2206263:2211429 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2211429, End: 2212577, Length: 1149

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008542:197500:2325172325172336561140Burkholderia cenocepacia HI2424 chromosome 1, complete sequencephage integrase family protein1e-89330
NC_010688:3229820:3236495323649532376431149Xanthomonas campestris pv. campestris, complete genomephage-related integrase4e-50199
NC_007086:3334000:3339234333923433403821149Xanthomonas campestris pv. campestris str. 8004, complete genomephage-related integrase4e-50199
NC_003902:1680414:1701875170187517030231149Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase4e-50199
NC_015580:3834244:3840713384071338418881176Novosphingobium sp. PP1Y, complete genomephage-related integrase8e-43174
NC_013722:2150882:2175502217550221766951194Xanthomonas albilineans, complete genomeputative phage-related integrase protein1e-41170
NC_014217:2760898:2760898276089827622741377Starkeya novella DSM 506 chromosome, complete genomeintegrase family protein2e-28127
NC_017249:2109843:2145227214522721466121386Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1480.9
NC_008060:3155133:319304531930453193317273Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage-related integrase2e-1377.4
NC_014355:243543:2579012579012590221122Candidatus Nitrospira defluvii, complete genomephage integrase9e-1375.1
NC_014355:1223243:1233478123347812345481071Candidatus Nitrospira defluvii, complete genomeputative integrase5e-1272.4
NC_011894:4360577:4394475439447543958331359Methylobacterium nodulans ORS 2060, complete genomeintegrase family protein5e-1065.9
NC_013854:2148215:215822121582212159126906Azospirillum sp. B510, complete genomeintegrase4e-0962.8
NC_008043:615049:6341046341046353391236Silicibacter sp. TM1040 mega plasmid, complete sequencephage integrase8e-0961.6
NC_008789:350650:3635873635873647261140Halorhodospira halophila SL1, complete genomephage integrase family protein2e-0860.5
NC_014355:288000:2962442962442972841041Candidatus Nitrospira defluvii, complete genomeputative phage integrase3e-0860.1
NC_009952:366959:3847653847653859581194Dinoroseobacter shibae DFL 12, complete genomephage integrase family protein4e-0859.3
NC_015681:1558873:1561014156101415622041191Thermodesulfatator indicus DSM 15286 chromosome, complete genomeintegrase family protein8e-0858.5
NC_013209:1969734:198503619850361985983948Acetobacter pasteurianus IFO 3283-01, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017100:1972389:198769119876911988638948Acetobacter pasteurianus IFO 3283-03, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017108:1969716:198501819850181985965948Acetobacter pasteurianus IFO 3283-12, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017111:1969704:198500619850061985953948Acetobacter pasteurianus IFO 3283-32, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017121:1969716:198501819850181985965948Acetobacter pasteurianus IFO 3283-07, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017125:1972384:198768619876861988633948Acetobacter pasteurianus IFO 3283-22, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017146:1972396:198769819876981988645948Acetobacter pasteurianus IFO 3283-26, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_017150:1877480:189278218927821893729948Acetobacter pasteurianus IFO 3283-01-42C, complete genomephage DNA recombinase RipX/XerC7e-0858.5
NC_007760:4055860:408811340881134088940828Anaeromyxobacter dehalogenans 2CP-C, complete genomePhage integrase1e-0758.2
NC_016809:389561:4020064020064030491044Haemophilus influenzae 10810, complete genomeDLP12 prophage integrase2e-0757.4
NC_020134:420500:4225864225864238031218Clostridium stercorarium subsp. stercorarium DSM 8532, completetyrosine recombinase XerC-like protein4e-0756.2
NC_012483:729000:7325207325207339471428Acidobacterium capsulatum ATCC 51196, complete genomephage integrase family protein6e-0755.5
NC_009052:4335754:4352962435296243540921131Shewanella baltica OS155, complete genomephage integrase family protein1e-0654.3
NC_006350:3957454:396679739667973967651855Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative bacteriophage integrase5e-0652.4
NC_007759:2179000:2183062218306221841561095Syntrophus aciditrophicus SB, complete genomephage integrase family protein7e-0652
NC_007520:903799:9043479043479053721026Thiomicrospira crunogena XCL-2, complete genomePhage integrase9e-0651.6
NC_014972:1126426:1145414114541411465951182Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein9e-0651.6