Pre_GI: BLASTP Hits

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Query: NC_007951:1928906:1934823 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1934823, End: 1935893, Length: 1071

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:2109843:213235121323512133292942Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-70266
NC_015957:8845274:887105688710568872006951Streptomyces violaceusniger Tu 4113 chromosome, complete genomeamidohydrolase 24e-63241
NC_015566:1206500:121259112125911213520930Serratia sp. AS12 chromosome, complete genomeamidohydrolase 23e-60232
NC_015567:1206727:121277612127761213705930Serratia sp. AS9 chromosome, complete genomeamidohydrolase 23e-60232
NC_007510:1921251:193361119336111934561951Burkholderia sp. 383 chromosome 1, complete sequenceAmidohydrolase 27e-60231
NC_012982:2772976:2786927278692727879341008Hirschia baltica ATCC 49814, complete genomeamidohydrolase 21e-54213
NC_013131:7437831:7449242744924274503421101Catenulispora acidiphila DSM 44928, complete genomeamidohydrolase 21e-53210
NC_009921:3473854:351422935142293515176948Frankia sp. EAN1pec, complete genomeamidohydrolase 22e-53209
NC_008596:4104476:411488741148874115840954Mycobacterium smegmatis str. MC2 155, complete genomeamidohydrolase 26e-50198
NC_008595:2546696:2548507254850725495381032Mycobacterium avium 104, complete genomeamidohydrolase 21e-47191
NC_014507:1127115:1135331113533111370611731Methanoplanus petrolearius DSM 11571 chromosome, complete genomeamidohydrolase 25e-39162
NC_016776:2549465:2561013256101325620261014Bacteroides fragilis 638R, complete genomeputative amidohydrolase1e-36154
NC_003228:2473956:2486215248621524872281014Bacteroides fragilis NCTC 9343, complete genomeputative amidohydrolase1e-36154
NC_014933:3688000:3708996370899637100061011Bacteroides helcogenes P 36-108 chromosome, complete genomeamidohydrolase 26e-34145
NC_015976:3118804:3123008312300831240841077Sphingobium sp. SYK-6, complete genomeputative hydrolase8e-25114
NC_009328:3241166:3257580325758032585901011Geobacillus thermodenitrificans NG80-2 chromosome, complete genome2-amino-3-carboxymuconate-6-semialdehyde decarboxylase3e-24113
NC_002944:1881405:189423518942351894861627Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein2e-1996.7
NC_012792:627500:6326296326296336451017Variovorax paradoxus S110 chromosome 2, complete genomeamidohydrolase 28e-1994.7
NC_008391:1210451:1235351123535112364061056Burkholderia cepacia AMMD chromosome 2, complete sequenceAminocarboxymuconate-semialdehyde decarboxylase2e-1893.2
NC_016947:1480282:148526914852691486249981Mycobacterium intracellulare MOTT-02 chromosome, complete genomeaminocarboxymuconate-semialdehyde decarboxylase2e-1893.2
NC_015976:814922:8333438333438343471005Sphingobium sp. SYK-6, complete genome5-carboxyvanillate decarboxylase1e-1687.8
NC_008148:2231045:2249890224989022509091020Rubrobacter xylanophilus DSM 9941, complete genomeAminocarboxymuconate-semialdehyde decarboxylase1e-1584.7
NC_019673:2051363:210328821032882104223936Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-1581.3
NC_014158:1566310:157241515724151573407993Tsukamurella paurometabola DSM 20162 chromosome, complete genomeo-pyrocatechuate decarboxylase2e-1480.5
NC_009077:4747922:475021947502194751178960Mycobacterium sp. JLS, complete genomeamidohydrolase 21e-1377.8
NC_014831:2133060:213736921373692138325957Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamidohydrolase 24e-1375.9
NC_013595:5221330:5241261524126152423371077Streptosporangium roseum DSM 43021, complete genomeAminocarboxymuconate-semialdehyde decarboxylase1e-1274.3
NC_009712:1008000:1019036101903610200581023Candidatus Methanoregula boonei 6A8, complete genomeamidohydrolase 21e-1170.9
NC_014307:2735934:275176627517662752746981Ralstonia solanacearum CFBP2957 chromosome, complete genomeamidohydrolase/decarboxylase3e-1170.1
NC_017506:1:5000550005510811077Marinobacter adhaerens HP15 chromosome, complete genomeamidohydrolase 25e-1168.9
NC_015976:814922:821214821214822212999Sphingobium sp. SYK-6, complete genome2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl meta-cleavage compound hydrolase2e-1067.4
NC_020181:1317647:1332797133279713338311035Enterobacter aerogenes EA1509E, complete genomeFIG00781114: hypothetical protein2e-0860.8
NC_013929:1670402:1689773168977316907891017Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-0653.9
NC_015500:1236874:124364212436421244403762Treponema brennaborense DSM 12168 chromosome, complete genomeo-pyrocatechuate decarboxylase3e-0653.1