Pre_GI: BLASTP Hits

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Query: NC_007951:1928906:1932176 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1932176, End: 1933489, Length: 1314

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010501:908000:9102059102059114971293Pseudomonas putida W619, complete genomefumarylacetoacetase9e-120430
NC_020209:397376:4010184010184023041287Pseudomonas poae RE*1-1-14, complete genomefumarylacetoacetase4e-117422
NC_014210:2277971:2283078228307822842951218Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,fumarylacetoacetase6e-80298
NC_015580:1328361:1340163134016313414731311Novosphingobium sp. PP1Y, complete genomefumarylacetoacetase2e-77290
NC_015312:681678:7031257031257042881164Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeFumarylacetoacetase1e-47191
NC_008148:2231045:224789622478962248858963Rubrobacter xylanophilus DSM 9941, complete genomefumarylacetoacetate (FAA) hydrolase8e-1478.6
NC_015514:3351052:3353187335318733541941008Cellulomonas fimi ATCC 484 chromosome, complete genomefumarylacetoacetate (FAA) hydrolase9e-1065.1
NC_015957:5310000:533036553303655331348984Streptomyces violaceusniger Tu 4113 chromosome, complete genomefumarylacetoacetate (FAA) hydrolase8e-0962
NC_017506:1:420754207543064990Marinobacter adhaerens HP15 chromosome, complete genomefumarylacetoacetate (FAA) hydrolase1e-0758.5
NC_008699:1247423:126019412601941261036843Nocardioides sp. JS614, complete genomefumarylacetoacetate (FAA) hydrolase1e-0758.2
NC_007802:2026500:204460320446032045520918Jannaschia sp. CCS1, complete genomefumarylacetoacetate (FAA) hydrolase2e-0757.4
NC_011004:4183993:421941242194124220401990Rhodopseudomonas palustris TIE-1, complete genomefumarylacetoacetate (FAA) hydrolase3e-0757
NC_009633:712500:715402715402716298897Alkaliphilus metalliredigens QYMF chromosome, complete genome5-carboxymethyl-2-hydroxymuconate delta-isomerase9e-0755.1