Pre_GI: BLASTP Hits

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Query: NC_007951:1928906:1930860 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1930860, End: 1932155, Length: 1296

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:397376:3997323997324010151284Pseudomonas poae RE*1-1-14, complete genomehomogentisate 1,2-dioxygenase2e-155549
NC_010501:908000:9089009089009102011302Pseudomonas putida W619, complete genomehomogentisate 1,2-dioxygenase1e-153542
NC_016111:986936:1004822100482210061651344Streptomyces cattleya NRRL 8057, complete genomehomogentisate 1,2-dioxygenase1e-145516
NC_007953:1043957:1060520106052010618091290Burkholderia xenovorans LB400 chromosome 3, complete sequenceHomogentisate 1,2-dioxygenase (HmgA)3e-118425
NC_015594:410454:4448674448674461771311Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeHomogentisate 1,2-dioxygenase2e-91336
NC_009901:2272206:2285111228511122862711161Shewanella pealeana ATCC 700345, complete genomehomogentisate 12-dioxygenase2e-1377.8
NC_015638:923660:9341729341729353321161Lacinutrix sp. 5H-3-7-4 chromosome, complete genomehomogentisate 12-dioxygenase1e-1171.2
NC_016001:224213:2454582454582466151158Flavobacterium branchiophilum, complete genomeHomogentisate 1,2-dioxygenase9e-1065.1
NC_012623:1874348:1874348187434818755021155Sulfolobus islandicus Y.N.15.51 chromosome, complete genomehomogentisate 12-dioxygenase2e-0963.9
NC_013769:826933:8269338269338280871155Sulfolobus islandicus L.D.8.5 chromosome, complete genomehomogentisate 1,2-dioxygenase4e-0962.8
NC_012589:633500:6494066494066505601155Sulfolobus islandicus L.S.2.15, complete genomehomogentisate 12-dioxygenase8e-0962
NC_017904:1763015:1785793178579317869051113Mycobacterium sp. MOTT36Y chromosome, complete genomehomogentisate 1,2-dioxygenase3e-0860.5
NC_016582:10287865:1029262110292621102937991179Streptomyces bingchenggensis BCW-1 chromosome, complete genomehomogentisate 1,2-dioxygenase4e-0756.6
NC_020125:1:1793179329561164Riemerella anatipestifer RA-CH-2, complete genomeHomogentisate 1,2-dioxygenase1e-0655.1