Pre_GI: BLASTP Hits

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Query: NC_007951:1042291:1051515 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1051515, End: 1053704, Length: 2190

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:4167500:4177424417742441796102187Pseudomonas putida KT2440, complete genomehypothetical protein1e-36155
NC_010322:5349000:5355799535579953579012103Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein1e-24115
NC_004578:5336773:5378945537894553810412097Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family domain protein2e-22108
NC_020209:4312892:4341256434125643433372082Pseudomonas poae RE*1-1-14, complete genomeintegrase family protein2e-1997.8
NC_018080:6048516:6087387608738760893511965Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein6e-1893.2
NC_015554:1653614:1670498167049816722941797Alteromonas sp. SN2 chromosome, complete genomehypothetical protein9e-1479.3
NC_015633:2565753:2593364259336425954902127Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein1e-1379
NC_010322:1817598:1854461185446118567132253Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein1e-0862.8