Pre_GI: BLASTP Hits

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Query: NC_007613:761234:778470 Shigella boydii Sb227, complete genome

Start: 778470, End: 778673, Length: 204

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020260:312805:334535334535334738204Cronobacter sakazakii Sp291, complete genomephage tail protein3e-31133
NC_003198:4453457:448972944897294489932204Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail protein3e-31133
NC_006511:2677964:267796426779642678167204Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative phage tail protein3e-31133
NC_010694:614985:642593642593642796204Erwinia tasmaniensis, complete genomePutative phage tail protein1e-30131
NC_011149:2802199:280290828029082803111204Salmonella enterica subsp. enterica serovar Agona str. SL483,phage Tail Protein X1e-30131
NC_016845:1773416:179080617908061791009204Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein2e-29127
NC_014562:2871765:287327228732722873475204Pantoea vagans C9-1 chromosome, complete genomeTail protein X (GpX)6e-28122
NC_014837:3766426:376766337676633767866204Pantoea sp. At-9b chromosome, complete genometail X family protein3e-27120
NC_014306:1244721:126312712631271263330204Erwinia billingiae Eb661, complete genomephage tail protein3e-26117
NC_014228:3022903:304225630422563042459204Xenorhabdus nematophila ATCC 19061, complete genomeTail protein X (GpX)2e-2097.8
NC_016818:1605918:162602016260201626223204Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeP2-like prophage tail protein X2e-1994.4
NC_017047:1551836:157276915727691572972204Rahnella aquatilis HX2 chromosome, complete genomeTail protein X (GpX)2e-1994.4
NC_013282:3389619:339032433903243390527204Cronobacter turicensis, complete genomeTail protein X5e-1889.7
NC_015061:1598920:162205416220541622257204Rahnella sp. Y9602 chromosome, complete genometail X family protein6e-1889.4
NC_017047:4037674:405901840590184059221204Rahnella aquatilis HX2 chromosome, complete genometail X family protein9e-1889
NC_012724:1892000:190903019090301909236207Burkholderia glumae BGR1 chromosome 1, complete genomePhage tail protein3e-1787.4
NC_020209:3262000:327978032797803279986207Pseudomonas poae RE*1-1-14, complete genomephage P2 tail gpX-like protein4e-1786.7
NC_015856:1152021:117174911717491171958210Collimonas fungivorans Ter331 chromosome, complete genomeputative phage tail protein5e-1786.3
NC_020211:4598217:459892545989254599128204Serratia marcescens WW4, complete genomephage Tail Protein X1e-1685.1
NC_014306:103545:124892124892125095204Erwinia billingiae Eb661, complete genomePhage tail protein X2e-1684
NC_003902:3514000:353515535351553535364210Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related tail protein1e-1581.6
NC_009648:3803622:382025138202513820454204Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail component protein3e-1580.9
NC_014722:193500:195782195782196054273Burkholderia rhizoxinica HKI 454, complete genometail protein X8e-1475.9
NC_012724:147454:147812147812148018207Burkholderia glumae BGR1 chromosome 1, complete genomePhage tail protein2e-1374.3
NC_007604:743738:747510747510747722213Synechococcus elongatus PCC 7942, complete genomehypothetical protein3e-1373.6
NC_006576:856014:873149873149873361213Synechococcus elongatus PCC 6301, complete genomehypothetical protein3e-1373.6
NC_002978:549454:552599552599552808210Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage P2W3, tail protein X, putative4e-1270.1
NC_010981:1371265:141200614120061412215210Wolbachia pipientis, complete genomephage tail protein GpX4e-1270.1
NC_010981:468465:482144482144482353210Wolbachia pipientis, complete genomePhage tail protein GpX4e-1270.1
NC_012416:753500:756980756980757186207Wolbachia sp. wRi, complete genometail protein X, putative1e-1168.9
NC_012962:4942000:495097349509734951215243Photorhabdus asymbiotica, complete genomeprobable phage tail protein2e-0960.8
NC_008390:2018201:203705720370572037263207Burkholderia cepacia AMMD chromosome 1, complete sequencephage tail X family protein2e-0857.8
NC_012881:2310141:232532323253232325526204Desulfovibrio salexigens DSM 2638, complete genometail X family protein5e-0856.6
NC_017033:1089579:109366110936611093867207Frateuria aurantia DSM 6220 chromosome, complete genomeP2-like prophage tail protein X2e-0754.3
NC_015381:3457784:347451634745163474722207Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage tail X family protein3e-0753.5
NC_015381:2109500:211340021134002113606207Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage tail X family protein5e-0753.1
NC_012560:3303961:330997833099783310172195Azotobacter vinelandii DJ, complete genomePhage tail X protein7e-0752.4
NC_021150:3303959:330997633099763310170195Azotobacter vinelandii CA6, complete genomePhage tail X protein7e-0752.4
NC_012724:3070386:308474130847413084947207Burkholderia glumae BGR1 chromosome 1, complete genomePhage tail X family protein8e-0752.4
NC_015381:3091500:311547331154733115679207Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage tail X family protein1e-0651.6
NC_017059:3688688:369362936936293693838210Rhodospirillum photometricum DSM 122, complete genomehypothetical protein4e-0650.1