Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1375476 Shigella boydii Sb227, complete genome

Start: 1375476, End: 1376006, Length: 531

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:1772994:177388417738841774414531Shigella boydii CDC 3083-94, complete genomephage tail protein I1e-99362
NC_012967:2105251:210812021081202108650531Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-60230
NC_017047:1551836:157879415787941579324531Rahnella aquatilis HX2 chromosome, complete genomephage Tail protein I5e-58223
NC_016818:1605918:163113516311351631665531Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage tail protein, P2 protein I family1e-57222
NC_015061:1598920:162735216273521627879528Rahnella sp. Y9602 chromosome, complete genomephage tail protein I3e-57220
NC_020064:871338:880257880257880823567Serratia marcescens FGI94, complete genomephage tail protein, P2 protein I family4e-55213
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-54211
NC_020181:5130513:517480151748015175409609Enterobacter aerogenes EA1509E, complete genomePhage tail fibers2e-53208
NC_014306:103545:129385129385129990606Erwinia billingiae Eb661, complete genomePhage tail protein I4e-53207
NC_003198:4453457:448475144847514485356606Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail protein5e-53206
NC_014837:3739408:376226537622653762879615Pantoea sp. At-9b chromosome, complete genomephage tail protein I7e-53206
NC_014228:3022903:303719030371903037798609Xenorhabdus nematophila ATCC 19061, complete genomeTail protein I (GpI)2e-52204
NC_012779:3016327:301572830157283016330603Edwardsiella ictaluri 93-146, complete genometail protein I (GpI)5e-52203
NC_014562:1698253:171940817194081720016609Pantoea vagans C9-1 chromosome, complete genomeTail protein I (GpI)9e-50196
NC_020064:871338:888846888846889454609Serratia marcescens FGI94, complete genomephage tail protein, P2 protein I family4e-47187
NC_020209:3262000:328592232859223286539618Pseudomonas poae RE*1-1-14, complete genomephage tail protein I1e-45182
NC_004578:3817330:384139638413963842001606Pseudomonas syringae pv. tomato str. DC3000, complete genometail protein I6e-44176
NC_009648:3803622:381383838138383814434597Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail protein3e-43174
NC_016845:1773416:179610017961001796699600Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,tail protein I6e-40163
NC_012962:4942000:494638149463814946773393Photorhabdus asymbiotica, complete genomeputative bacteriophage protein precursor5e-27120
NC_011740:2737467:275733027573302757893564Escherichia fergusonii ATCC 35469, complete genomeTail protein I4e-23107
NC_009801:2159123:218151221815122182138627Escherichia coli E24377A, complete genomephage tail protein I1e-22105
CP002797:1960000:197393219739321974558627Escherichia coli NA114, complete genomeputative phage tail protein2e-21102
NC_003919:3113343:311586131158613116403543Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related tail protein3e-21101
NC_012751:1988280:199800819980081998517510Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completephage tail protein I8e-2199.8
NC_007434:3973145:397726239772623977675414Burkholderia pseudomallei 1710b chromosome I, complete sequencephage tail protein I5e-1994
NC_012724:1892000:191419219141921914737546Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein4e-1890.9
NC_017192:1885457:191287819128781913426549Arcobacter sp. L, complete genomephage tail protein2e-1479
NC_010382:3643288:364706036470603647707648Lysinibacillus sphaericus C3-41, complete genomephage tail protein7e-1373.6
NC_009850:1651410:166491316649131665551639Arcobacter butzleri RM4018, complete genometail protein I, putative2e-1272
NC_014307:1765230:178180217818021782347546Ralstonia solanacearum CFBP2957 chromosome, complete genomephage tail protein2e-1168.2
NC_012962:4942000:494616049461604946435276Photorhabdus asymbiotica, complete genomeputative bacteriophage protein precursor5e-1167.4
NC_015276:2023663:202859820285982029350753Marinomonas mediterranea MMB-1 chromosome, complete genomephage tail protein I3e-1064.7
NC_015873:1241354:1244877124487712461841308Megasphaera elsdenii DSM 20460, complete genomeputative phage tail protein2e-0962
NC_017068:1732857:173422317342231734867645Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein1e-0859.3