Pre_GI: BLASTP Hits

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Query: NC_007492:5214709:5228434 Pseudomonas fluorescens PfO-1, complete genome

Start: 5228434, End: 5229405, Length: 972

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:2288700:230470923047092305695987Pseudomonas aeruginosa DK2 chromosome, complete genomeHNH endonuclease typeIV restriction enzyme1e-75283
NC_010571:1334000:133977913397791340618840Opitutus terrae PB90-1, complete genomeHNH endonuclease3e-26119
NC_012660:5242392:525473652547365255449714Pseudomonas fluorescens SBW25 chromosome, complete genomeputative 5-methylcytosine-specific restriction enzyme7e-1168.6
AC_000091:1191353:121192312119231212756834Escherichia coli W3110 DNA, complete genome5-methylcytosine-specific restriction endonuclease B9e-1064.7
NC_000913:1188999:120956912095691210402834Escherichia coli K12, complete genomee14 prophage; 5-methylcytosine-specific restriction endonuclease B9e-1064.7
NC_011146:3206000:321961232196123220313702Geobacter bemidjiensis Bem, complete genomeHNH endonuclease2e-0963.2
NC_017098:986428:995168995168995860693Spirochaeta africana DSM 8902 chromosome, complete genomeputative restriction endonuclease5e-0962
NC_010002:3465509:347135734713573472349993Delftia acidovorans SPH-1, complete genomeHNH endonuclease8e-0961.6
NC_006138:2288261:231215223121522312865714Desulfotalea psychrophila LSv54, complete genome5-methylcytosine-specific restriction enzyme A3e-0859.7
NC_014965:2200974:221588722158872216594708Vibrio vulnificus MO6-24/O chromosome I, complete sequenceHNH endonuclease1e-0757.4
NC_019974:1184871:1248465124846512498831419Natronococcus occultus SP4, complete genomeputative restriction endonuclease5e-0755.5
NC_003888:5042283:5052984505298450546661683Streptomyces coelicolor A3(2), complete genomehypothetical protein7e-0755.1
NC_008826:13393:283812838129043663Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein3e-0653.1