Pre_GI: BLASTP Hits

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Query: NC_007384:278810:296389 Shigella sonnei Ss046, complete genome

Start: 296389, End: 296649, Length: 261

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011992:2279752:230400623040062304269264Acidovorax ebreus TPSY, complete genomeaddiction module antitoxin, RelB/DinJ family1e-1375.1
NC_020829:2152000:215817321581732158364192Pseudomonas denitrificans ATCC 13867, complete genomeDNA-damage-inducible protein J3e-1167
NC_007512:944941:951196951196951459264Pelodictyon luteolum DSM 273, complete genomeDNA-damage-inducible protein J3e-1167
NC_010161:432000:433469433469433726258Bartonella tribocorum CIP 105476, complete genomeDNA-damage-inducible protein4e-1166.6
NC_015850:2048251:211905121190512119317267Acidithiobacillus caldus SM-1 chromosome, complete genomeRelB/DinJ family addiction module antitoxin4e-1166.6
NC_012846:986877:989045989045989317273Bartonella grahamii as4aup, complete genomeDNA-damage-inducible protein J7e-1165.9
NC_012846:1778443:178061117806111780883273Bartonella grahamii as4aup, complete genomeDNA-damage-inducible protein J7e-1165.9
NC_012846:1708840:172488117248811725153273Bartonella grahamii as4aup, complete genomeDNA-damage-inducible protein J7e-1165.9
NC_012846:1952178:195434619543461954618273Bartonella grahamii as4aup, complete genomeDNA-damage-inducible protein J7e-1165.9
NC_014722:846084:864004864004864276273Burkholderia rhizoxinica HKI 454, complete genomeDNA-damage-inducible protein J4e-1063.5
NC_012846:1147000:116078511607851161066282Bartonella grahamii as4aup, complete genomeDNA-damage-inducible protein J1e-0962
NC_011761:1357799:137525413752541375523270Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeDNA-damage-inducible protein J2e-0960.8
NC_008758:12000:127771277712968192Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, completeaddiction module antitoxin, RelB/DinJ family3e-0960.5
NC_011887:110618:128880128880129188309Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completeaddiction module antitoxin, RelB/DinJ family6e-0959.3
NC_007948:1972290:198213719821371982403267Polaromonas sp. JS666, complete genomeRelB antitoxin2e-0651.2
NC_013410:2253631:227481622748162275109294Fibrobacter succinogenes subsp. succinogenes S85 chromosome,RelB/DinJ family addiction module antitoxin3e-0650.8