Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:2253631 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
225363122548961266ammonium transporterQuickGO ontologyBLASTP
22549522255293342nitrogen regulatory protein P-IIQuickGO ontologyBLASTP
225552022572111692CTP synthetaseQuickGO ontologyBLASTP
22576232258321699hypothetical proteinBLASTP
22583342259143810alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
225937122630183648endonucleaseQuickGO ontologyBLASTP
22630212264007987hypothetical proteinBLASTP
226401622656621647DNA methylase N-4N-6 domain-containing proteinQuickGO ontologyBLASTP
226567422683552682type III restriction protein res subunitQuickGO ontologyBLASTP
226855422707912238cell division protein FtsKQuickGO ontologyBLASTP
227085822723991542Heat shock protein 70QuickGO ontologyBLASTP
22724182273137720hypothetical proteinBLASTP
22731512274059909hypothetical proteinBLASTP
22743392274794456nucleic acid binding proteinQuickGO ontologyBLASTP
22748162275109294RelBDinJ family addiction module antitoxinQuickGO ontologyBLASTP
22752472275858612hypothetical protein
22759142276249336hypothetical protein
22762152276457243hypothetical protein
22769102277620711hypothetical proteinBLASTP
22777242277930207hypothetical protein
22780712278979909hypothetical protein
22789922279633642hypothetical protein
22796902280403714hypothetical proteinBLASTP
22807282281192465hypothetical protein
228131522824451131hypothetical proteinBLASTP
22824472282614168hypothetical protein