Pre_GI: BLASTP Hits

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Query: NC_006905:3780000:3800105 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 3800105, End: 3801427, Length: 1323

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008800:4488112:4509849450984945111681320Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,xylose isomerase0824
NC_017160:4508000:4527070452707045283891320Yersinia pestis D182038 chromosome, complete genomexylose isomerase0820
NC_008150:4634695:4649076464907646503951320Yersinia pestis Antiqua, complete genomexylose isomerase0820
NC_010465:62348:6234862348636671320Yersinia pseudotuberculosis YPIII, complete genomexylose isomerase0820
NC_015224:4426167:4444682444468244460011320Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,xylose isomerase0817
NC_012731:600518:6575606575606588791320Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomexylose isomerase0806
NC_011283:4966471:4968123496812349694421320Klebsiella pneumoniae 342 chromosome, complete genomexylose isomerase0804
NC_013850:4829455:4831108483110848324271320Klebsiella variicola At-22 chromosome, complete genomexylose isomerase0803
NC_014837:33014:5554855548568701323Pantoea sp. At-9b chromosome, complete genomexylose isomerase0782
NC_007952:444616:4624634624634637851323Burkholderia xenovorans LB400 chromosome 2, complete sequenceXylose isomerase0639
NC_018644:637497:6408766408766421831308Alpha proteobacterium HIMB59 chromosome, complete genomeD-xylose isomerase3e-144511
NC_015732:3105649:3105649310564931069921344Spirochaeta caldaria DSM 7334 chromosome, complete genomeXylose isomerase5e-143508
NC_011898:3973627:3990923399092339922421320Clostridium cellulolyticum H10, complete genomexylose isomerase4e-140498
NC_010320:143109:1506181506181519341317Thermoanaerobacter sp. X514 chromosome, complete genomexylose isomerase4e-136484
NC_014538:187747:1904841904841918001317Thermoanaerobacter sp. X513 chromosome, complete genomexylose isomerase4e-136484
NC_011978:699500:7169587169587182921335Thermotoga neapolitana DSM 4359, complete genomeXylose isomerase2e-133476
NC_014650:2143033:2158878215887821602031326Geobacillus sp. Y4.1MC1 chromosome, complete genomexylose isomerase3e-129462
NC_017195:1852935:1873091187309118744281338Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completexylose isomerase4e-129461
NC_006510:1901954:1901954190195419032911338Geobacillus kaustophilus HTA426, complete genomexylose isomerase3e-128458
NC_014206:1745203:1766446176644617677831338Geobacillus sp. C56-T3 chromosome, complete genomexylose isomerase3e-127455
NC_020210:1908000:1909932190993219112691338Geobacillus sp. GHH01, complete genomexylose isomerase4e-127454
NC_010162:7620000:7625761762576176270921332Sorangium cellulosum 'So ce 56', complete genomexylose isomerase1e-125449
NC_020410:1781884:1798834179883418001711338Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completexylose isomerase8e-125447
NC_019896:2158223:2176407217640721777441338Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completexylose isomerase6e-125447
NC_009725:1787262:1801447180144718027841338Bacillus amyloliquefaciens FZB42, complete genomeXylA5e-125447
NC_019842:1847081:1860980186098018623171338Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,xylose isomerase2e-124446
NC_017191:1568369:1594166159416615955031338Bacillus amyloliquefaciens XH7 chromosome, complete genomexylose isomerase2e-124446
NC_017190:1832402:1848585184858518499221338Bacillus amyloliquefaciens LL3 chromosome, complete genomeXylose isomerase2e-124446
NC_017188:1567000:1592862159286215941991338Bacillus amyloliquefaciens TA208 chromosome, complete genomexylose isomerase2e-124446
NC_020244:1875834:1897797189779718991341338Bacillus subtilis XF-1, complete genomexylose isomerase3e-124445
NC_014976:17909:1790917909192461338Bacillus subtilis BSn5 chromosome, complete genomexylose isomerase5e-124444
NC_010003:225420:2324592324592337751317Petrotoga mobilis SJ95, complete genomexylose isomerase5e-124444
NC_020272:2077795:2099488209948821008251338Bacillus amyloliquefaciens IT-45, complete genomexylose isomerase5e-124444
NC_000964:1873398:1891116189111618924531338Bacillus subtilis subsp. subtilis str. 168, complete genomexylose isomerase2e-123442
NC_016047:1978312:1992284199228419936211338Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completexylose isomerase2e-121436
NC_014479:1831404:1845754184575418470911338Bacillus subtilis subsp. spizizenii str. W23 chromosome, completexylose isomerase4e-121434
NC_014041:3229867:3245682324568232469921311Zunongwangia profunda SM-A87 chromosome, complete genomexylose isomerase3e-119428
NC_014169:1909482:1926538192653819278871350Bifidobacterium longum subsp. longum JDM301 chromosome, completeD-xylose isomerase1e-105383
NC_008010:321561:3369283369283381391212Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceXylose isomerase7e-21102
NC_014212:670996:6832496832496844121164Meiothermus silvanus DSM 9946 chromosome, complete genomexylose isomerase2e-20100
NC_007333:1743890:1850605185060518517621158Thermobifida fusca YX, complete genomexylose isomerase7e-1892.4
NC_014246:1787154:1792799179279917939651167Mobiluncus curtisii ATCC 43063 chromosome, complete genomexylose isomerase4e-1789.7
NC_010407:151599:1653021653021664951194Clavibacter michiganensis subsp. sepedonicus chromosome, completexylose isomerase1e-1688.2
NC_016023:915178:920915920915921250336Bacillus coagulans 36D1 chromosome, complete genomexylose isomerase4e-1479.7