Pre_GI: BLASTP Hits

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Query: NC_005139:1784000:1877487 Vibrio vulnificus YJ016 chromosome I, complete sequence

Start: 1877487, End: 1877729, Length: 243

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016446:49618:907549075490996243Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeprevent-host-death protein3e-32136
NC_012667:931390:995791995791996033243Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein3e-32136
NC_012583:335000:349638349638349880243Vibrio cholerae O395 chromosome chromosome II, complete sequencePrevent-host-death protein3e-32136
NC_008345:4107847:413248341324834132743261Shewanella frigidimarina NCIMB 400, complete genomeprevent-host-death family protein6e-1269.7
NC_008750:450233:453943453943454203261Shewanella sp. W3-18-1, complete genomeprevent-host-death family protein7e-1269.3
NC_019940:424000:429627429627429917291Thioflavicoccus mobilis 8321 chromosome, complete genomeprevent-host-death family protein4e-0650.1