Pre_GI: BLASTP Hits

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Query: NC_005126:2063667:2083583 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 2083583, End: 2084938, Length: 1356

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:2934232:2949982294998229516701689Dickeya dadantii 3937 chromosome, complete genomeputative carboxypeptidase3e-159561
NC_016745:2913712:2935636293563629370871452Oceanimonas sp. GK1 chromosome, complete genomecell wall degradation protein1e-63244
NC_008639:2460033:2479552247955224812431692Chlorobium phaeobacteroides DSM 266, complete genomePeptidoglycan-binding domain 1 protein5e-63242
NC_015276:1947936:1949822194982219515101689Marinomonas mediterranea MMB-1 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-60234
NC_014972:3688000:3692153369215336940631911Desulfobulbus propionicus DSM 2032 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein6e-54212
NC_007626:2354260:2404247240424724058541608Magnetospirillum magneticum AMB-1, complete genomehypothetical protein6e-52205
NC_009663:2500186:2502798250279825044741677Sulfurovum sp. NBC37-1, complete genomehypothetical protein6e-52205
NC_015277:380624:3958923958923975381647Sphingobacterium sp. 21 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein2e-50200
NC_009952:1680682:1683367168336716849771611Dinoroseobacter shibae DFL 12, complete genomehypothetical protein8e-50198
NC_016778:96792:1186541186541206662013Brucella canis HSK A52141 chromosome 1, complete sequencecell wall degradation protein2e-48193
NC_009831:2884851:2890472289047228919231452Shewanella sediminis HAW-EB3, complete genomehypothetical protein6e-48192
NC_003317:1030220:1052069105206910536641596Brucella melitensis 16M chromosome I, complete sequencecell wall degradation protein9e-47187
NC_010172:1522707:1544587154458715458911305Methylobacterium extorquens PA1, complete genomePeptidoglycan-binding domain 1 protein1e-45184
NC_011369:1135592:1187040118704011883411302Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, completepeptidoglycan-binding protein1e-43177
NC_008686:1180388:1202142120214212037491608Paracoccus denitrificans PD1222 chromosome 1, complete sequencePeptidoglycan-binding domain 1 protein2e-43176
NC_003911:2042389:2056316205631620579291614Silicibacter pomeroyi DSS-3, complete genomepeptidoglycan binding protein, putative1e-41171
NC_009901:2427291:2433784243378424350881305Shewanella pealeana ATCC 700345, complete genomePeptidoglycan-binding domain 1 protein1e-38160
NC_010334:2749250:2769167276916727705011335Shewanella halifaxensis HAW-EB4, complete genomePeptidoglycan-binding domain 1 protein7e-38158
NC_014033:1664500:1682674168267416841641491Prevotella ruminicola 23 chromosome, complete genomeputative lipoprotein2e-25117
NC_016795:1441024:146288314628831463314432Brucella abortus A13334 chromosome 1, complete sequencecell wall degradation protein5e-1892.8
NC_016795:1441024:1463311146331114645521242Brucella abortus A13334 chromosome 1, complete sequencepeptidoglycan-binding domain-containing protein1e-1275.1