Pre_GI: BLASTP Hits

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Query: NC_005126:1223042:1236988 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1236988, End: 1238178, Length: 1191

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009708:4182460:4202151420215142034281278Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeshufflon protein7e-115414
NC_012214:3502992:3507968350796835093801413Erwinia pyrifoliae Ep1/96, complete genometype IV prepilin2e-60233
NC_008463:5246954:5286291528629152876191329Pseudomonas aeruginosa UCBPP-PA14, complete genomeType IV B pilus protein8e-54211
NC_018080:5091772:5131282513128251326611380Pseudomonas aeruginosa DK2 chromosome, complete genometype IV pilus protein PilV1e-52207
NC_009656:4527457:4611877461187746132561380Pseudomonas aeruginosa PA7 chromosome, complete genometype IV pilus protein PilV3e-52206
NC_012751:942315:9483479483479496151269Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilV type IV pilus minor pilin subunit, shufflon protein3e-49196
NC_012751:1296877:1310861131086113122251365Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilV type IV pilus minor pilin subunit, shufflon protein4e-49195
NC_004129:5373886:5408742540874254099531212Pseudomonas fluorescens Pf-5, complete genometype IV prepilin PilV, putative1e-47190
NC_005773:866157:889863889863890840978Pseudomonas syringae pv. phaseolicola 1448A, complete genometype IV pilus protein PilV2, putative, truncated6e-36152
NC_004547:611178:6140716140716154651395Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative Type IV pilus prepilin protein5e-32138
NC_007507:11000:2002320023215101488Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilV-like type IV prepilin1e-1997.8
NC_015224:3587500:3601516360151636028321317Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Large exoprotein involved in heme utilization or adhesion2e-1583.6
NC_010682:1624985:1632361163236116336591299Ralstonia pickettii 12J chromosome 1, complete sequencehypothetical protein4e-1479.7
NC_007950:185500:1938351938351953581524Polaromonas sp. JS666 plasmid 2, complete sequencehypothetical protein1e-1274.3
NC_016832:948029:9668079668079682281422Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Prepilin-type N-cleavage/methylation domain protein9e-1065.1
NC_011149:1987291:2001320200132020027561437Salmonella enterica subsp. enterica serovar Agona str. SL483,prepilin-type N- cleavage/methylation domain protein7e-0962
NC_004547:1873390:1916388191638819179801593Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative type IV prepilin7e-0962
NC_004431:2185750:2197781219778121992441464Escherichia coli CFT073, complete genomePilV-like protein3e-0860.1
NC_008253:1938975:1950936195093619523991464Escherichia coli 536, complete genomePilV-like protein3e-0860.1
NC_011601:2139188:2163561216356121650241464Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein4e-0859.7
NC_013421:1696746:1710973171097317124211449Pectobacterium wasabiae WPP163, complete genomeputative type IV prepilin6e-0858.9
NC_011745:2209288:2245708224570822472791572Escherichia coli ED1a chromosome, complete genomeputative PilV-like protein1e-0654.7