Pre_GI: BLASTP Hits

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Query: NC_004741:310382:316960 Shigella flexneri 2a str. 2457T, complete genome

Start: 316960, End: 317421, Length: 462

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:269806:274041274041274544504Shigella flexneri 5 str. 8401, complete genomehypothetical protein8e-72268
NC_004337:309833:324465324465324899435Shigella flexneri 2a str. 301, complete genomeputative phage tail fibre protein3e-64243
NC_007712:3067000:307497130749713075399429Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-1994.4
NC_020064:871338:878066878066878491426Serratia marcescens FGI94, complete genomeCaudovirales tail fiber assembly protein2e-1581.6
NC_003198:4453457:448272144827214483128408Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail fibre protein6e-1269.7
NC_010102:1829357:184176318417631842170408Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1269.7
NC_010102:1779707:180070718007071801114408Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1168.6
NC_009436:1141376:115196011519601152382423Enterobacter sp. 638, complete genomephage tail assembly chaperone gp382e-1167.8
NC_013892:992811:101244310124431012859417Xenorhabdus bovienii SS-2004 chromosome, complete genomeCPS-53 (KpLE1) prophage; tail fiber assembly5e-1166.6
NC_007712:4023516:403166940316694032190522Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-0962.4
NC_014500:177824:188977188977189354378Dickeya dadantii 3937 chromosome, complete genomeputative tail fiber assembly protein3e-0857.8
NC_012759:2342986:235490423549042355344441Escherichia coli BW2952 chromosome, complete genomeCPS-53 (KpLE1) prophage protein6e-0753.1
NC_000913:2455037:246909924690992469539441Escherichia coli K12, complete genomeCPS-53 (KpLE1) prophage; conserved protein6e-0753.1
AC_000091:2462461:247652324765232476963441Escherichia coli W3110 DNA, complete genomehypothetical protein6e-0753.1
NC_010473:2548946:256086425608642561304441Escherichia coli str. K-12 substr. DH10B, complete genomeCPS-53 (KpLE1) prophage; conserved protein6e-0753.1
NC_012559:1888000:190339419033941904245852Laribacter hongkongensis HLHK9, complete genomeHsdM1e-0652
NC_007519:3355768:335959433595943360178585Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein7e-0649.7