Pre_GI: BLASTP Hits

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Query: NC_004631:2205821:2229355 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2229355, End: 2230776, Length: 1422

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:2201860:2226120222612022275411422Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Deoxyribodipyrimidine photo-lyase0948
NC_011147:2085241:2109527210952721109481422Salmonella enterica subsp. enterica serovar Paratyphi A strdeoxyribodipyrimidine photolyase0941
NC_006511:2090058:2114344211434421157651422Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCdeoxyribodipyrimidine photolyase0941
NC_010102:2322866:2347834234783423493361503Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0932
NC_012967:707083:7204007204007218211422Escherichia coli B str. REL606 chromosome, complete genomedeoxyribodipyrimidine photolyase0766
NC_012947:3077922:3082785308278530842061422Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completedeoxyribodipyrimidine photolyase0766
NC_010468:3209326:3214192321419232156101419Escherichia coli ATCC 8739, complete genomeDeoxyribodipyrimidine photo-lyase0765
CP002185:794732:8102778102778116951419Escherichia coli W, complete genomedeoxyribodipyrimidine photolyase, FAD-binding protein0764
NC_015224:1514747:1531720153172015331651446Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,deoxyribodipyrimidine photolyase1e-163576
NC_012779:2755338:2773018277301827744331416Edwardsiella ictaluri 93-146, complete genomedeoxyribodipyrimidine photo-lyase4e-140498
NC_020209:47504:1247871247871262291443Pseudomonas poae RE*1-1-14, complete genomedeoxyribodipyrimidine photolyase1e-100367
NC_008027:896000:9163439163439177971455Pseudomonas entomophila L48, complete genomedeoxyribodipyrimidine photolyase (photoreactivation), FAD-binding4e-99362
NC_010475:2896000:2918298291829829197311434Synechococcus sp. PCC 7002, complete genomedeoxyribopyrimidine photolyase3e-75282
NC_013757:900500:9014229014229027861365Geodermatophilus obscurus DSM 43160, complete genomeDeoxyribodipyrimidine photo-lyase6e-74278
NC_008782:1863853:1869256186925618707221467Acidovorax sp. JS42, complete genomeDeoxyribodipyrimidine photo-lyase5e-72272
NC_007516:193498:2206182206182220511434Synechococcus sp. CC9605, complete genomeDeoxyribodipyrimidine photolyase1e-71271
NC_008347:1636660:1636660163666016381591500Maricaulis maris MCS10, complete genomeDeoxyribodipyrimidine photo-lyase3e-67256
NC_009485:5171658:5173487517348751749321446Bradyrhizobium sp. BTAi1 chromosome, complete genomedeoxyribodipyrimidine photo-lyase type I5e-67255
NC_007940:97949:1207501207501221771428Rickettsia bellii RML369-C, complete genomeDeoxyribodipyrimidine photo-lyase7e-66251
NC_018679:2412000:2430005243000524314351431Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completedeoxyribodipyrimidine photo-lyase4e-65249
NC_006677:1052031:1073968107396810754071440Gluconobacter oxydans 621H, complete genomeDeoxyribodipyrimidine photolyase5e-64245
NC_017095:1627686:1632270163227016336101341Fervidobacterium pennivorans DSM 9078 chromosome, complete genomedeoxyribodipyrimidine photolyase1e-63244
NC_017262:1913302:1925116192511619265191404Zymomonas mobilis subsp. mobilis ATCC 10988 chromosome, completedeoxyribodipyrimidine photo-lyase3e-63243
NC_016940:3632974:3632974363297436343111338Saprospira grandis str. Lewin chromosome, complete genomedeoxyribodipyrimidine photo-lyase9e-62238
NC_013960:243884:2613422613422627751434Nitrosococcus halophilus Nc4 chromosome, complete genomeDeoxyribodipyrimidine photo-lyase4e-61236
NC_018643:857911:8799138799138813371425Alpha proteobacterium HIMB5 chromosome, complete genomeFAD-binding protein, DNA photolyase family,DNA photolyase2e-61236
NC_016001:1893685:1914423191442319157091287Flavobacterium branchiophilum, complete genomeDeoxyribodipyrimidine photolyase PhrB12e-61236
NC_007205:1232734:1253122125312212545431422Candidatus Pelagibacter ubique HTCC1062, complete genomeDeoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme)5e-61235
NC_008576:1413778:1431359143135914327891431Magnetococcus sp. MC-1, complete genomeDeoxyribodipyrimidine photo-lyase2e-60233
NC_010003:1052997:1059259105925910606471389Petrotoga mobilis SJ95, complete genomeDeoxyribodipyrimidine photo-lyase4e-59229
NC_010125:763141:7676137676137690041392Gluconacetobacter diazotrophicus PAl 5, complete genomeputative deoxyribodipyrimidine photo-lyase2e-57223
NC_017059:1727095:1727095172709517282041110Rhodospirillum photometricum DSM 122, complete genomeDeoxyribodipyrimidine photo-lyase type I3e-55216
NC_012588:211633:2264832264832277841302Sulfolobus islandicus M.14.25 chromosome, complete genomedeoxyribodipyrimidine photo-lyase6e-51202
NC_006958:628035:6440146440146454621449Corynebacterium glutamicum ATCC 13032, complete genomeDEOXYRIBODIPYRIMIDINE PHOTOLYASE3e-50199
NC_003450:627500:6425536425536440011449Corynebacterium glutamicum ATCC 13032, complete genomedeoxyribodipyrimidine photolyase3e-50199
NC_009718:1470972:1490049149004914913591311Fervidobacterium nodosum Rt17-B1, complete genomedeoxyribodipyrimidine photo-lyase5e-48192
NC_009428:807577:8293688293688307801413Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomedeoxyribodipyrimidine photo-lyase1e-45184
NC_013967:2641433:2680567268056726820781512Haloferax volcanii DS2 chromosome, complete genomedeoxyribodipyrimidine photolyase2e-36154
NC_020911:4428000:4449886444988644514211536Octadecabacter antarcticus 307, complete genomecytochrome/photolyase-like protein6e-36152
NC_013446:2237854:2258323225832322597441422Comamonas testosteroni CNB-2, complete genomeDNA photolyase, FAD-binding protein1e-30134
NC_015948:2367000:2368100236810023697041605Haloarcula hispanica ATCC 33960 chromosome chromosome I, completedeoxyribodipyrimidine photolyase8e-30132
NC_014752:2087998:2114050211405021153511302Neisseria lactamica ST-640, complete genomedeoxyribodopyrimidine photolyase2e-29130
NC_012668:1688500:1691333169133316927181386Vibrio cholerae MJ-1236 chromosome 1, complete sequencedeoxyribodipyrimidine photolyase single-strand-specific6e-26119
NC_017270:1755552:1790924179092417923121389Vibrio cholerae LMA3984-4 chromosome chromosome I, completeDeoxyribodipyrimidine photolyase, single-strand- specific4e-25116
NC_018644:137755:1403511403511417961446Alpha proteobacterium HIMB59 chromosome, complete genomeFAD-binding protein, DNA photolyase family,DNA photolyase6e-21102
NC_015186:2839668:2839668283966828412871620Acidiphilium multivorum AIU301, complete genomedeoxyribodipyrimidine photo-lyase1e-1894.7
NC_018644:516157:536362536362537096735Alpha proteobacterium HIMB59 chromosome, complete genomeFAD-binding protein, DNA photolyase family6e-1892.4
NC_008319:262894:263822263822264769948Synechococcus sp. CC9311, complete genomeblue light photoreceptor cryptochrome4e-1273.2
NC_017079:5034500:5058257505825750596331377Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomehypothetical protein2e-1170.9
NC_020911:4428000:4436048443604844372651218Octadecabacter antarcticus 307, complete genomehypothetical protein1e-1068.2