Pre_GI: BLASTP Hits

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Query: NC_004603:3080614:3103510 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 3103510, End: 3104082, Length: 573

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:238580:272001272001272573573Vibrio cholerae IEC224 chromosome I, complete sequenceuracil-DNA glycosylase2e-77287
NC_016445:2663837:269599726959972696569573Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeuracil-DNA glycosylase2e-77287
NC_012582:272320:304472304472305044573Vibrio cholerae O395 chromosome chromosome I, complete sequencehypothetical protein2e-77287
NC_012578:224559:256717256717257289573Vibrio cholerae M66-2 chromosome I, complete sequencehypothetical protein2e-77287
NC_009457:2764972:279712427971242797696573Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein2e-77287
NC_002505:238569:271990271990272562573Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein2e-77287
NC_014119:1059223:108354710835471084173627Burkholderia sp. CCGE1002 chromosome chromosome 3, completeUracil-DNA glycosylase superfamily2e-60231
NC_015422:3836911:385125038512503851840591Alicycliphilus denitrificans K601 chromosome, complete genomeuracil-DNA glycosylase superfamily2e-59228
NC_007974:1007834:102153810215381022143606Ralstonia metallidurans CH34 chromosome 2, complete sequenceuracil-DNA glycosylase superfamily1e-57222
NC_009659:1050532:110184611018461102430585Janthinobacterium sp. Marseille chromosome, complete genomeuracil-DNA glycosylase1e-56218
NC_009009:1295607:130169813016981302282585Streptococcus sanguinis SK36, complete genomeUracil-DNA glycosylase, putative8e-52202
NC_014319:587977:603855603855604427573Leuconostoc gasicomitatum LMG 18811, complete genomeuracil DNA glycosylase superfamily protein5e-51200
NC_012004:470492:471616471616472191576Streptococcus uberis 0140J, complete genomeuracil DNA glycosylase superfamily protein5e-51200
NC_014376:2921769:292932129293212929896576Clostridium saccharolyticum WM1 chromosome, complete genomeUracil-DNA glycosylase superfamily9e-50196
NC_013715:699400:700930700930701631702Rothia mucilaginosa DY-18, complete genomeuracil-DNA glycosylase5e-49193
NC_015433:1315363:133398713339871334565579Streptococcus suis ST3 chromosome, complete genomeUracil-DNA glycosylase superfamily5e-47187
NC_007929:111092:113377113377113973597Lactobacillus salivarius subsp. salivarius UCC118, complete genomeUracil DNA glycosylase superfamily protein4e-47187
NC_012470:580373:581838581838582413576Streptococcus equi subsp. zooepidemicus, complete genomeuracil DNA glycosylase superfamily protein4e-47187
NC_014334:589526:607356607356607937582Lactobacillus casei str. Zhang chromosome, complete genomeUracil-DNA glycosylase9e-46182
NC_010163:1361217:137704613770461377627582Acholeplasma laidlawii PG-8A chromosome, complete genomeuracil-DNA glycosylase superfamily protein3e-45181
NC_008686:1180388:119975711997571200419663Paracoccus denitrificans PD1222 chromosome 1, complete sequenceUracil-DNA glycosylase superfamily2e-40164
NC_009484:857384:862613862613862954342Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein2e-1788.6