Pre_GI: BLASTP Hits

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Query: NC_004603:3080614:3084846 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 3084846, End: 3086348, Length: 1503

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:846358:8535858535858551021518Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-61236
NC_013956:4490000:4500366450036645019191554Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-58227
NC_006138:1735723:1743785174378517452331449Desulfotalea psychrophila LSv54, complete genomehypothetical protein6e-51202
NC_015556:515641:5255045255045268591356Pseudomonas fulva 12-X chromosome, complete genomeKAP P-loop domain protein2e-35150
NC_009665:3984080:3999495399949540008861392Shewanella baltica OS185 chromosome, complete genomeKAP P-loop domain-containing protein2e-31137
NC_004603:3080614:3089197308919730905551359Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein1e-30134
NC_014370:885937:9085059085059109282424Prevotella melaninogenica ATCC 25845 chromosome chromosome I,KAP family P-loop domain protein1e-30134
NC_003197:2327474:2337824233782423391551332Salmonella typhimurium LT2, complete genomehypothetical protein1e-24114
NC_010102:683444:7066547066547079851332Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-24114
NC_016810:2325190:2335540233554023368711332Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein1e-24114
NC_016856:2379027:2389377238937723907081332Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-24114
NC_016857:2325190:2335540233554023368711332Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74KAP P-loop domain-containing protein1e-24114
NC_016863:2324293:2337569233756923389001332Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-24114
NC_017046:2324554:2334904233490423362351332Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein1e-24114
NC_016860:2323017:2333367233336723346981332Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-24113
NC_011083:2375061:2385404238540423867351332Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,KAP P-loop domain protein7e-24112
NC_017047:3085000:3093675309367530949701296Rahnella aquatilis HX2 chromosome, complete genomeKAP P-loop domain-containing protein2e-22107
NC_020211:2012480:2031726203172620330391314Serratia marcescens WW4, complete genomeKAP P-loop domain protein5e-22106
NC_004459:2443000:244855424485542449429876Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted P-loop ATPase3e-1687
NC_010322:5349000:5382289538228953841601872Pseudomonas putida GB-1 chromosome, complete genomeKAP P-loop domain-containing protein2e-0758.2
NC_008253:296500:2983772983773001281752Escherichia coli 536, complete genometruncated phage T7 exclusion protein2e-0757.4
NC_013194:1040197:1048741104874110506871947Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeKAP P-loop domain protein3e-0757.4
NC_006582:4256915:4267499426749942693251827Bacillus clausii KSM-K16, complete genomehypothetical protein1e-0655.5
NC_010510:409469:4094694094694112441776Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeKAP P-loop domain protein2e-0653.9
NC_015410:3093465:3135543313554331375071965Pseudomonas mendocina NK-01 chromosome, complete genomekap P-loop domain-containing protein3e-0653.5
NC_010515:2111691:2133783213378321356691887Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceKAP P-loop domain protein5e-0652.8
NC_008061:190287:2107852107852126711887Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceKAP P-loop5e-0652.8